Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23395 and AO356_23400 overlap by 7 nucleotides AO356_23400 and AO356_23405 overlap by 4 nucleotides AO356_23405 and AO356_23410 are separated by 318 nucleotides
AO356_23395: AO356_23395 - ABC transporter permease, at 5,246,264 to 5,247,091
_23395
AO356_23400: AO356_23400 - phosphonate ABC transporter, at 5,247,085 to 5,247,885
_23400
AO356_23405: AO356_23405 - phosphonate ABC transporter substrate-binding protein, at 5,247,882 to 5,248,733
_23405
AO356_23410: AO356_23410 - polyphosphate kinase, at 5,249,052 to 5,249,969
_23410
Position (kb) 5247
5248
5249 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5247.158 kb on + strand at 5247.159 kb on - strand at 5247.159 kb on - strand at 5247.401 kb on + strand, within AO356_23400 at 5247.549 kb on + strand, within AO356_23400 at 5247.550 kb on - strand, within AO356_23400 at 5247.928 kb on + strand at 5247.928 kb on + strand at 5247.928 kb on + strand at 5247.929 kb on - strand at 5247.929 kb on - strand at 5247.929 kb on - strand at 5247.929 kb on - strand at 5247.929 kb on - strand at 5248.078 kb on + strand, within AO356_23405 at 5248.078 kb on + strand, within AO356_23405 at 5248.079 kb on - strand, within AO356_23405 at 5248.079 kb on - strand, within AO356_23405 at 5248.079 kb on - strand, within AO356_23405 at 5248.087 kb on + strand, within AO356_23405 at 5248.088 kb on - strand, within AO356_23405 at 5248.173 kb on + strand, within AO356_23405 at 5248.252 kb on + strand, within AO356_23405 at 5248.253 kb on - strand, within AO356_23405 at 5248.253 kb on - strand, within AO356_23405 at 5248.253 kb on - strand, within AO356_23405 at 5248.253 kb on - strand, within AO356_23405 at 5248.772 kb on + strand at 5248.772 kb on + strand at 5248.773 kb on - strand at 5248.813 kb on + strand at 5248.813 kb on + strand at 5249.101 kb on + strand at 5249.101 kb on + strand at 5249.101 kb on + strand at 5249.101 kb on + strand at 5249.159 kb on - strand, within AO356_23410 at 5249.287 kb on + strand, within AO356_23410 at 5249.287 kb on + strand, within AO356_23410 at 5249.288 kb on - strand, within AO356_23410 at 5249.288 kb on - strand, within AO356_23410 at 5249.407 kb on + strand, within AO356_23410 at 5249.407 kb on + strand, within AO356_23410 at 5249.408 kb on - strand, within AO356_23410 at 5249.408 kb on - strand, within AO356_23410 at 5249.479 kb on + strand, within AO356_23410 at 5249.479 kb on + strand, within AO356_23410 at 5249.480 kb on - strand, within AO356_23410 at 5249.480 kb on - strand, within AO356_23410 at 5249.530 kb on + strand, within AO356_23410 at 5249.530 kb on + strand, within AO356_23410 at 5249.531 kb on - strand, within AO356_23410 at 5249.531 kb on - strand, within AO356_23410 at 5249.584 kb on + strand, within AO356_23410
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 5,247,158 + -1.0 5,247,159 - +0.1 5,247,159 - -0.5 5,247,401 + AO356_23400 0.39 +0.3 5,247,549 + AO356_23400 0.58 -2.2 5,247,550 - AO356_23400 0.58 +0.3 5,247,928 + +1.2 5,247,928 + -0.2 5,247,928 + -1.0 5,247,929 - +0.9 5,247,929 - +0.6 5,247,929 - +0.8 5,247,929 - -3.1 5,247,929 - +1.0 5,248,078 + AO356_23405 0.23 +0.7 5,248,078 + AO356_23405 0.23 -0.3 5,248,079 - AO356_23405 0.23 -1.4 5,248,079 - AO356_23405 0.23 +1.0 5,248,079 - AO356_23405 0.23 -0.3 5,248,087 + AO356_23405 0.24 -1.2 5,248,088 - AO356_23405 0.24 -0.9 5,248,173 + AO356_23405 0.34 -0.1 5,248,252 + AO356_23405 0.43 -0.8 5,248,253 - AO356_23405 0.44 -0.1 5,248,253 - AO356_23405 0.44 -1.0 5,248,253 - AO356_23405 0.44 +0.2 5,248,253 - AO356_23405 0.44 +0.4 5,248,772 + +0.5 5,248,772 + -0.1 5,248,773 - -0.8 5,248,813 + +0.9 5,248,813 + -0.9 5,249,101 + -1.8 5,249,101 + +0.6 5,249,101 + +1.5 5,249,101 + -0.1 5,249,159 - AO356_23410 0.12 -0.8 5,249,287 + AO356_23410 0.26 +0.4 5,249,287 + AO356_23410 0.26 +0.4 5,249,288 - AO356_23410 0.26 +0.1 5,249,288 - AO356_23410 0.26 -0.2 5,249,407 + AO356_23410 0.39 -0.2 5,249,407 + AO356_23410 0.39 +0.0 5,249,408 - AO356_23410 0.39 +0.2 5,249,408 - AO356_23410 0.39 -0.2 5,249,479 + AO356_23410 0.47 -0.8 5,249,479 + AO356_23410 0.47 -0.1 5,249,480 - AO356_23410 0.47 +0.2 5,249,480 - AO356_23410 0.47 -1.7 5,249,530 + AO356_23410 0.52 -2.2 5,249,530 + AO356_23410 0.52 -0.8 5,249,531 - AO356_23410 0.52 +0.2 5,249,531 - AO356_23410 0.52 +1.6 5,249,584 + AO356_23410 0.58 -1.2
Or see this region's nucleotide sequence