Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22285 and AO356_22290 are separated by 167 nucleotides AO356_22290 and AO356_22295 overlap by 4 nucleotides
AO356_22285: AO356_22285 - LacI family transcriptional regulator, at 4,983,916 to 4,984,920
_22285
AO356_22290: AO356_22290 - oxidoreductase, at 4,985,088 to 4,986,263
_22290
AO356_22295: AO356_22295 - AP endonuclease, at 4,986,260 to 4,987,339
_22295
Position (kb) 4985
4986
4987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4984.943 kb on + strand at 4984.944 kb on - strand at 4984.983 kb on + strand at 4984.983 kb on + strand at 4984.984 kb on - strand at 4985.048 kb on + strand at 4985.111 kb on - strand at 4985.111 kb on - strand at 4985.493 kb on + strand, within AO356_22290 at 4985.494 kb on - strand, within AO356_22290 at 4985.511 kb on + strand, within AO356_22290 at 4985.512 kb on - strand, within AO356_22290 at 4985.639 kb on + strand, within AO356_22290 at 4985.758 kb on + strand, within AO356_22290 at 4985.758 kb on + strand, within AO356_22290 at 4986.070 kb on - strand, within AO356_22290 at 4986.304 kb on + strand at 4986.304 kb on + strand at 4986.386 kb on + strand, within AO356_22295 at 4986.386 kb on + strand, within AO356_22295 at 4986.386 kb on + strand, within AO356_22295 at 4986.386 kb on + strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.387 kb on - strand, within AO356_22295 at 4986.422 kb on + strand, within AO356_22295 at 4986.423 kb on - strand, within AO356_22295 at 4986.458 kb on + strand, within AO356_22295 at 4986.458 kb on + strand, within AO356_22295 at 4986.459 kb on - strand, within AO356_22295 at 4986.717 kb on - strand, within AO356_22295 at 4986.723 kb on - strand, within AO356_22295 at 4986.723 kb on - strand, within AO356_22295 at 4986.927 kb on - strand, within AO356_22295 at 4986.927 kb on - strand, within AO356_22295 at 4986.962 kb on + strand, within AO356_22295 at 4986.962 kb on + strand, within AO356_22295 at 4986.963 kb on - strand, within AO356_22295 at 4986.963 kb on - strand, within AO356_22295 at 4987.052 kb on + strand, within AO356_22295 at 4987.052 kb on + strand, within AO356_22295 at 4987.053 kb on - strand, within AO356_22295 at 4987.151 kb on + strand, within AO356_22295
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 4,984,943 + -1.0 4,984,944 - +0.4 4,984,983 + -0.1 4,984,983 + +1.1 4,984,984 - -0.1 4,985,048 + +0.7 4,985,111 - +0.2 4,985,111 - -0.4 4,985,493 + AO356_22290 0.34 -1.4 4,985,494 - AO356_22290 0.35 -1.0 4,985,511 + AO356_22290 0.36 -2.2 4,985,512 - AO356_22290 0.36 +0.9 4,985,639 + AO356_22290 0.47 -0.5 4,985,758 + AO356_22290 0.57 -1.2 4,985,758 + AO356_22290 0.57 +0.1 4,986,070 - AO356_22290 0.84 -2.1 4,986,304 + -0.7 4,986,304 + -0.6 4,986,386 + AO356_22295 0.12 +0.2 4,986,386 + AO356_22295 0.12 +1.3 4,986,386 + AO356_22295 0.12 +0.7 4,986,386 + AO356_22295 0.12 -0.8 4,986,387 - AO356_22295 0.12 +0.1 4,986,387 - AO356_22295 0.12 -0.4 4,986,387 - AO356_22295 0.12 +0.8 4,986,387 - AO356_22295 0.12 -0.2 4,986,422 + AO356_22295 0.15 +0.4 4,986,423 - AO356_22295 0.15 +1.1 4,986,458 + AO356_22295 0.18 +0.4 4,986,458 + AO356_22295 0.18 +0.4 4,986,459 - AO356_22295 0.18 -0.7 4,986,717 - AO356_22295 0.42 -0.9 4,986,723 - AO356_22295 0.43 +0.4 4,986,723 - AO356_22295 0.43 -2.4 4,986,927 - AO356_22295 0.62 -0.5 4,986,927 - AO356_22295 0.62 +0.1 4,986,962 + AO356_22295 0.65 -1.1 4,986,962 + AO356_22295 0.65 +2.0 4,986,963 - AO356_22295 0.65 +0.9 4,986,963 - AO356_22295 0.65 +1.6 4,987,052 + AO356_22295 0.73 +1.0 4,987,052 + AO356_22295 0.73 +0.9 4,987,053 - AO356_22295 0.73 +0.0 4,987,151 + AO356_22295 0.82 +0.7
Or see this region's nucleotide sequence