Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21755

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_21750 and AO356_21755 are separated by 206 nucleotidesAO356_21755 and AO356_21760 are separated by 89 nucleotides AO356_21750: AO356_21750 - hypothetical protein, at 4,868,889 to 4,869,833 _21750 AO356_21755: AO356_21755 - AraC family transcriptional regulator, at 4,870,040 to 4,871,077 _21755 AO356_21760: AO356_21760 - oxidoreductase, at 4,871,167 to 4,872,138 _21760 Position (kb) 4870 4871 4872Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4869.088 kb on + strand, within AO356_21750at 4869.088 kb on + strand, within AO356_21750at 4869.089 kb on - strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.119 kb on - strand, within AO356_21750at 4869.119 kb on - strand, within AO356_21750at 4869.119 kb on - strand, within AO356_21750at 4869.121 kb on + strand, within AO356_21750at 4869.122 kb on - strand, within AO356_21750at 4869.235 kb on + strand, within AO356_21750at 4869.235 kb on + strand, within AO356_21750at 4869.235 kb on + strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.308 kb on - strand, within AO356_21750at 4869.308 kb on - strand, within AO356_21750at 4869.346 kb on + strand, within AO356_21750at 4869.346 kb on + strand, within AO356_21750at 4869.347 kb on - strand, within AO356_21750at 4869.508 kb on + strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.551 kb on - strand, within AO356_21750at 4869.640 kb on + strand, within AO356_21750at 4869.640 kb on + strand, within AO356_21750at 4869.640 kb on + strand, within AO356_21750at 4869.641 kb on - strand, within AO356_21750at 4869.641 kb on - strand, within AO356_21750at 4869.649 kb on + strand, within AO356_21750at 4869.649 kb on + strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.652 kb on + strand, within AO356_21750at 4869.846 kb on + strandat 4869.846 kb on + strandat 4869.846 kb on + strandat 4869.847 kb on - strandat 4869.847 kb on - strandat 4869.849 kb on + strandat 4869.849 kb on + strandat 4869.849 kb on + strandat 4869.849 kb on + strandat 4869.850 kb on - strandat 4869.850 kb on - strandat 4869.850 kb on - strandat 4869.882 kb on - strandat 4869.882 kb on - strandat 4869.882 kb on - strandat 4869.887 kb on + strandat 4869.887 kb on + strandat 4869.888 kb on - strandat 4869.888 kb on - strandat 4869.888 kb on - strandat 4869.888 kb on - strandat 4869.915 kb on + strandat 4869.916 kb on - strandat 4869.927 kb on + strandat 4869.955 kb on - strandat 4869.964 kb on + strandat 4869.964 kb on + strandat 4869.964 kb on + strandat 4870.017 kb on + strandat 4870.017 kb on + strandat 4870.017 kb on + strandat 4870.067 kb on + strandat 4870.068 kb on - strandat 4870.208 kb on + strand, within AO356_21755at 4870.514 kb on + strand, within AO356_21755at 4870.584 kb on - strand, within AO356_21755at 4870.584 kb on - strand, within AO356_21755at 4870.595 kb on + strand, within AO356_21755at 4870.596 kb on - strand, within AO356_21755at 4870.596 kb on - strand, within AO356_21755at 4870.596 kb on - strand, within AO356_21755at 4871.075 kb on + strandat 4871.076 kb on - strandat 4871.103 kb on + strandat 4871.104 kb on - strandat 4871.104 kb on - strandat 4871.237 kb on - strandat 4871.237 kb on - strandat 4871.237 kb on - strandat 4871.237 kb on - strandat 4871.300 kb on - strand, within AO356_21760at 4871.329 kb on + strand, within AO356_21760at 4871.377 kb on + strand, within AO356_21760at 4871.410 kb on + strand, within AO356_21760at 4871.411 kb on - strand, within AO356_21760at 4871.411 kb on - strand, within AO356_21760at 4871.412 kb on + strand, within AO356_21760at 4871.413 kb on - strand, within AO356_21760at 4871.502 kb on - strand, within AO356_21760at 4871.536 kb on + strand, within AO356_21760at 4871.537 kb on - strand, within AO356_21760at 4871.676 kb on + strand, within AO356_21760at 4871.677 kb on - strand, within AO356_21760at 4871.704 kb on + strand, within AO356_21760at 4871.704 kb on + strand, within AO356_21760at 4871.705 kb on - strand, within AO356_21760at 4871.705 kb on - strand, within AO356_21760at 4871.803 kb on + strand, within AO356_21760at 4871.803 kb on + strand, within AO356_21760at 4871.804 kb on - strand, within AO356_21760at 4871.970 kb on + strand, within AO356_21760at 4871.970 kb on + strand, within AO356_21760at 4872.032 kb on + strand, within AO356_21760at 4872.032 kb on + strand, within AO356_21760at 4872.032 kb on + strand, within AO356_21760at 4872.033 kb on - strand, within AO356_21760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
remove
4,869,088 + AO356_21750 0.21 -1.9
4,869,088 + AO356_21750 0.21 -2.3
4,869,089 - AO356_21750 0.21 +0.1
4,869,118 + AO356_21750 0.24 -2.0
4,869,118 + AO356_21750 0.24 -0.7
4,869,118 + AO356_21750 0.24 +0.5
4,869,118 + AO356_21750 0.24 -1.5
4,869,118 + AO356_21750 0.24 +1.6
4,869,119 - AO356_21750 0.24 -0.5
4,869,119 - AO356_21750 0.24 +0.0
4,869,119 - AO356_21750 0.24 -1.4
4,869,121 + AO356_21750 0.25 -0.8
4,869,122 - AO356_21750 0.25 -2.2
4,869,235 + AO356_21750 0.37 -0.1
4,869,235 + AO356_21750 0.37 -0.0
4,869,235 + AO356_21750 0.37 +0.5
4,869,236 - AO356_21750 0.37 -0.7
4,869,236 - AO356_21750 0.37 -2.7
4,869,236 - AO356_21750 0.37 -0.8
4,869,236 - AO356_21750 0.37 +0.7
4,869,236 - AO356_21750 0.37 +0.5
4,869,236 - AO356_21750 0.37 -0.5
4,869,236 - AO356_21750 0.37 -0.3
4,869,301 + AO356_21750 0.44 +1.4
4,869,301 + AO356_21750 0.44 -0.0
4,869,301 + AO356_21750 0.44 +0.5
4,869,301 + AO356_21750 0.44 +0.0
4,869,302 - AO356_21750 0.44 +0.7
4,869,302 - AO356_21750 0.44 +0.3
4,869,302 - AO356_21750 0.44 +0.5
4,869,302 - AO356_21750 0.44 +0.3
4,869,308 - AO356_21750 0.44 +0.1
4,869,308 - AO356_21750 0.44 -0.8
4,869,346 + AO356_21750 0.48 -0.1
4,869,346 + AO356_21750 0.48 +0.7
4,869,347 - AO356_21750 0.48 +0.5
4,869,508 + AO356_21750 0.66 -0.8
4,869,509 - AO356_21750 0.66 +1.0
4,869,509 - AO356_21750 0.66 -0.2
4,869,509 - AO356_21750 0.66 -0.6
4,869,509 - AO356_21750 0.66 +1.1
4,869,509 - AO356_21750 0.66 +0.3
4,869,509 - AO356_21750 0.66 -0.1
4,869,551 - AO356_21750 0.70 -0.9
4,869,640 + AO356_21750 0.79 -0.8
4,869,640 + AO356_21750 0.79 +0.4
4,869,640 + AO356_21750 0.79 -0.0
4,869,641 - AO356_21750 0.80 -0.8
4,869,641 - AO356_21750 0.80 +0.7
4,869,649 + AO356_21750 0.80 -1.5
4,869,649 + AO356_21750 0.80 +1.4
4,869,650 - AO356_21750 0.81 +0.7
4,869,650 - AO356_21750 0.81 -2.6
4,869,650 - AO356_21750 0.81 -0.1
4,869,650 - AO356_21750 0.81 -1.0
4,869,650 - AO356_21750 0.81 +0.3
4,869,650 - AO356_21750 0.81 -1.9
4,869,652 + AO356_21750 0.81 -1.4
4,869,846 + +0.5
4,869,846 + -0.4
4,869,846 + -1.8
4,869,847 - -1.8
4,869,847 - +0.8
4,869,849 + +1.3
4,869,849 + +0.8
4,869,849 + -0.5
4,869,849 + +0.3
4,869,850 - -2.6
4,869,850 - -0.9
4,869,850 - -0.2
4,869,882 - +0.2
4,869,882 - -0.5
4,869,882 - +0.8
4,869,887 + +0.8
4,869,887 + -0.7
4,869,888 - +0.2
4,869,888 - +0.8
4,869,888 - -0.8
4,869,888 - +0.7
4,869,915 + -0.4
4,869,916 - -1.5
4,869,927 + +1.2
4,869,955 - -1.2
4,869,964 + +1.3
4,869,964 + +1.5
4,869,964 + -0.3
4,870,017 + -0.1
4,870,017 + +0.7
4,870,017 + -0.5
4,870,067 + +0.1
4,870,068 - +1.0
4,870,208 + AO356_21755 0.16 +1.5
4,870,514 + AO356_21755 0.46 -0.7
4,870,584 - AO356_21755 0.52 -1.8
4,870,584 - AO356_21755 0.52 -1.6
4,870,595 + AO356_21755 0.53 +0.9
4,870,596 - AO356_21755 0.54 +0.3
4,870,596 - AO356_21755 0.54 +0.5
4,870,596 - AO356_21755 0.54 +0.3
4,871,075 + -1.2
4,871,076 - -0.8
4,871,103 + -0.4
4,871,104 - -1.2
4,871,104 - +1.4
4,871,237 - -0.5
4,871,237 - -1.1
4,871,237 - +0.2
4,871,237 - +0.5
4,871,300 - AO356_21760 0.14 -1.5
4,871,329 + AO356_21760 0.17 +1.9
4,871,377 + AO356_21760 0.22 +0.6
4,871,410 + AO356_21760 0.25 -3.1
4,871,411 - AO356_21760 0.25 +1.5
4,871,411 - AO356_21760 0.25 -0.9
4,871,412 + AO356_21760 0.25 -0.8
4,871,413 - AO356_21760 0.25 -0.5
4,871,502 - AO356_21760 0.34 +1.4
4,871,536 + AO356_21760 0.38 -1.1
4,871,537 - AO356_21760 0.38 -1.3
4,871,676 + AO356_21760 0.52 -0.1
4,871,677 - AO356_21760 0.52 +0.5
4,871,704 + AO356_21760 0.55 -0.3
4,871,704 + AO356_21760 0.55 -0.9
4,871,705 - AO356_21760 0.55 -0.2
4,871,705 - AO356_21760 0.55 +1.8
4,871,803 + AO356_21760 0.65 -0.3
4,871,803 + AO356_21760 0.65 +1.5
4,871,804 - AO356_21760 0.66 -0.7
4,871,970 + AO356_21760 0.83 +0.1
4,871,970 + AO356_21760 0.83 -0.5
4,872,032 + AO356_21760 0.89 +0.9
4,872,032 + AO356_21760 0.89 +0.3
4,872,032 + AO356_21760 0.89 +0.5
4,872,033 - AO356_21760 0.89 +1.3

Or see this region's nucleotide sequence