Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21750 and AO356_21755 are separated by 206 nucleotides AO356_21755 and AO356_21760 are separated by 89 nucleotides
AO356_21750: AO356_21750 - hypothetical protein, at 4,868,889 to 4,869,833
_21750
AO356_21755: AO356_21755 - AraC family transcriptional regulator, at 4,870,040 to 4,871,077
_21755
AO356_21760: AO356_21760 - oxidoreductase, at 4,871,167 to 4,872,138
_21760
Position (kb)
4870
4871
4872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4869.088 kb on + strand, within AO356_21750 at 4869.088 kb on + strand, within AO356_21750 at 4869.089 kb on - strand, within AO356_21750 at 4869.118 kb on + strand, within AO356_21750 at 4869.118 kb on + strand, within AO356_21750 at 4869.118 kb on + strand, within AO356_21750 at 4869.118 kb on + strand, within AO356_21750 at 4869.118 kb on + strand, within AO356_21750 at 4869.119 kb on - strand, within AO356_21750 at 4869.119 kb on - strand, within AO356_21750 at 4869.119 kb on - strand, within AO356_21750 at 4869.121 kb on + strand, within AO356_21750 at 4869.122 kb on - strand, within AO356_21750 at 4869.235 kb on + strand, within AO356_21750 at 4869.235 kb on + strand, within AO356_21750 at 4869.235 kb on + strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.236 kb on - strand, within AO356_21750 at 4869.301 kb on + strand, within AO356_21750 at 4869.301 kb on + strand, within AO356_21750 at 4869.301 kb on + strand, within AO356_21750 at 4869.301 kb on + strand, within AO356_21750 at 4869.302 kb on - strand, within AO356_21750 at 4869.302 kb on - strand, within AO356_21750 at 4869.302 kb on - strand, within AO356_21750 at 4869.302 kb on - strand, within AO356_21750 at 4869.308 kb on - strand, within AO356_21750 at 4869.308 kb on - strand, within AO356_21750 at 4869.346 kb on + strand, within AO356_21750 at 4869.346 kb on + strand, within AO356_21750 at 4869.347 kb on - strand, within AO356_21750 at 4869.508 kb on + strand, within AO356_21750 at 4869.509 kb on - strand, within AO356_21750 at 4869.509 kb on - strand, within AO356_21750 at 4869.509 kb on - strand, within AO356_21750 at 4869.509 kb on - strand, within AO356_21750 at 4869.509 kb on - strand, within AO356_21750 at 4869.509 kb on - strand, within AO356_21750 at 4869.551 kb on - strand, within AO356_21750 at 4869.640 kb on + strand, within AO356_21750 at 4869.640 kb on + strand, within AO356_21750 at 4869.640 kb on + strand, within AO356_21750 at 4869.641 kb on - strand, within AO356_21750 at 4869.641 kb on - strand, within AO356_21750 at 4869.649 kb on + strand, within AO356_21750 at 4869.649 kb on + strand, within AO356_21750 at 4869.650 kb on - strand, within AO356_21750 at 4869.650 kb on - strand, within AO356_21750 at 4869.650 kb on - strand, within AO356_21750 at 4869.650 kb on - strand, within AO356_21750 at 4869.650 kb on - strand, within AO356_21750 at 4869.650 kb on - strand, within AO356_21750 at 4869.652 kb on + strand, within AO356_21750 at 4869.846 kb on + strand at 4869.846 kb on + strand at 4869.846 kb on + strand at 4869.847 kb on - strand at 4869.847 kb on - strand at 4869.849 kb on + strand at 4869.849 kb on + strand at 4869.849 kb on + strand at 4869.849 kb on + strand at 4869.850 kb on - strand at 4869.850 kb on - strand at 4869.850 kb on - strand at 4869.882 kb on - strand at 4869.882 kb on - strand at 4869.882 kb on - strand at 4869.887 kb on + strand at 4869.887 kb on + strand at 4869.888 kb on - strand at 4869.888 kb on - strand at 4869.888 kb on - strand at 4869.888 kb on - strand at 4869.915 kb on + strand at 4869.916 kb on - strand at 4869.927 kb on + strand at 4869.955 kb on - strand at 4869.964 kb on + strand at 4869.964 kb on + strand at 4869.964 kb on + strand at 4870.017 kb on + strand at 4870.017 kb on + strand at 4870.017 kb on + strand at 4870.067 kb on + strand at 4870.068 kb on - strand at 4870.208 kb on + strand, within AO356_21755 at 4870.514 kb on + strand, within AO356_21755 at 4870.584 kb on - strand, within AO356_21755 at 4870.584 kb on - strand, within AO356_21755 at 4870.595 kb on + strand, within AO356_21755 at 4870.596 kb on - strand, within AO356_21755 at 4870.596 kb on - strand, within AO356_21755 at 4870.596 kb on - strand, within AO356_21755 at 4871.075 kb on + strand at 4871.076 kb on - strand at 4871.103 kb on + strand at 4871.104 kb on - strand at 4871.104 kb on - strand at 4871.237 kb on - strand at 4871.237 kb on - strand at 4871.237 kb on - strand at 4871.237 kb on - strand at 4871.300 kb on - strand, within AO356_21760 at 4871.329 kb on + strand, within AO356_21760 at 4871.377 kb on + strand, within AO356_21760 at 4871.410 kb on + strand, within AO356_21760 at 4871.411 kb on - strand, within AO356_21760 at 4871.411 kb on - strand, within AO356_21760 at 4871.412 kb on + strand, within AO356_21760 at 4871.413 kb on - strand, within AO356_21760 at 4871.502 kb on - strand, within AO356_21760 at 4871.536 kb on + strand, within AO356_21760 at 4871.537 kb on - strand, within AO356_21760 at 4871.676 kb on + strand, within AO356_21760 at 4871.677 kb on - strand, within AO356_21760 at 4871.704 kb on + strand, within AO356_21760 at 4871.704 kb on + strand, within AO356_21760 at 4871.705 kb on - strand, within AO356_21760 at 4871.705 kb on - strand, within AO356_21760 at 4871.803 kb on + strand, within AO356_21760 at 4871.803 kb on + strand, within AO356_21760 at 4871.804 kb on - strand, within AO356_21760 at 4871.970 kb on + strand, within AO356_21760 at 4871.970 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.033 kb on - strand, within AO356_21760
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 4,869,088 + AO356_21750 0.21 -1.9 4,869,088 + AO356_21750 0.21 -2.3 4,869,089 - AO356_21750 0.21 +0.1 4,869,118 + AO356_21750 0.24 -2.0 4,869,118 + AO356_21750 0.24 -0.7 4,869,118 + AO356_21750 0.24 +0.5 4,869,118 + AO356_21750 0.24 -1.5 4,869,118 + AO356_21750 0.24 +1.6 4,869,119 - AO356_21750 0.24 -0.5 4,869,119 - AO356_21750 0.24 +0.0 4,869,119 - AO356_21750 0.24 -1.4 4,869,121 + AO356_21750 0.25 -0.8 4,869,122 - AO356_21750 0.25 -2.2 4,869,235 + AO356_21750 0.37 -0.1 4,869,235 + AO356_21750 0.37 -0.0 4,869,235 + AO356_21750 0.37 +0.5 4,869,236 - AO356_21750 0.37 -0.7 4,869,236 - AO356_21750 0.37 -2.7 4,869,236 - AO356_21750 0.37 -0.8 4,869,236 - AO356_21750 0.37 +0.7 4,869,236 - AO356_21750 0.37 +0.5 4,869,236 - AO356_21750 0.37 -0.5 4,869,236 - AO356_21750 0.37 -0.3 4,869,301 + AO356_21750 0.44 +1.4 4,869,301 + AO356_21750 0.44 -0.0 4,869,301 + AO356_21750 0.44 +0.5 4,869,301 + AO356_21750 0.44 +0.0 4,869,302 - AO356_21750 0.44 +0.7 4,869,302 - AO356_21750 0.44 +0.3 4,869,302 - AO356_21750 0.44 +0.5 4,869,302 - AO356_21750 0.44 +0.3 4,869,308 - AO356_21750 0.44 +0.1 4,869,308 - AO356_21750 0.44 -0.8 4,869,346 + AO356_21750 0.48 -0.1 4,869,346 + AO356_21750 0.48 +0.7 4,869,347 - AO356_21750 0.48 +0.5 4,869,508 + AO356_21750 0.66 -0.8 4,869,509 - AO356_21750 0.66 +1.0 4,869,509 - AO356_21750 0.66 -0.2 4,869,509 - AO356_21750 0.66 -0.6 4,869,509 - AO356_21750 0.66 +1.1 4,869,509 - AO356_21750 0.66 +0.3 4,869,509 - AO356_21750 0.66 -0.1 4,869,551 - AO356_21750 0.70 -0.9 4,869,640 + AO356_21750 0.79 -0.8 4,869,640 + AO356_21750 0.79 +0.4 4,869,640 + AO356_21750 0.79 -0.0 4,869,641 - AO356_21750 0.80 -0.8 4,869,641 - AO356_21750 0.80 +0.7 4,869,649 + AO356_21750 0.80 -1.5 4,869,649 + AO356_21750 0.80 +1.4 4,869,650 - AO356_21750 0.81 +0.7 4,869,650 - AO356_21750 0.81 -2.6 4,869,650 - AO356_21750 0.81 -0.1 4,869,650 - AO356_21750 0.81 -1.0 4,869,650 - AO356_21750 0.81 +0.3 4,869,650 - AO356_21750 0.81 -1.9 4,869,652 + AO356_21750 0.81 -1.4 4,869,846 + +0.5 4,869,846 + -0.4 4,869,846 + -1.8 4,869,847 - -1.8 4,869,847 - +0.8 4,869,849 + +1.3 4,869,849 + +0.8 4,869,849 + -0.5 4,869,849 + +0.3 4,869,850 - -2.6 4,869,850 - -0.9 4,869,850 - -0.2 4,869,882 - +0.2 4,869,882 - -0.5 4,869,882 - +0.8 4,869,887 + +0.8 4,869,887 + -0.7 4,869,888 - +0.2 4,869,888 - +0.8 4,869,888 - -0.8 4,869,888 - +0.7 4,869,915 + -0.4 4,869,916 - -1.5 4,869,927 + +1.2 4,869,955 - -1.2 4,869,964 + +1.3 4,869,964 + +1.5 4,869,964 + -0.3 4,870,017 + -0.1 4,870,017 + +0.7 4,870,017 + -0.5 4,870,067 + +0.1 4,870,068 - +1.0 4,870,208 + AO356_21755 0.16 +1.5 4,870,514 + AO356_21755 0.46 -0.7 4,870,584 - AO356_21755 0.52 -1.8 4,870,584 - AO356_21755 0.52 -1.6 4,870,595 + AO356_21755 0.53 +0.9 4,870,596 - AO356_21755 0.54 +0.3 4,870,596 - AO356_21755 0.54 +0.5 4,870,596 - AO356_21755 0.54 +0.3 4,871,075 + -1.2 4,871,076 - -0.8 4,871,103 + -0.4 4,871,104 - -1.2 4,871,104 - +1.4 4,871,237 - -0.5 4,871,237 - -1.1 4,871,237 - +0.2 4,871,237 - +0.5 4,871,300 - AO356_21760 0.14 -1.5 4,871,329 + AO356_21760 0.17 +1.9 4,871,377 + AO356_21760 0.22 +0.6 4,871,410 + AO356_21760 0.25 -3.1 4,871,411 - AO356_21760 0.25 +1.5 4,871,411 - AO356_21760 0.25 -0.9 4,871,412 + AO356_21760 0.25 -0.8 4,871,413 - AO356_21760 0.25 -0.5 4,871,502 - AO356_21760 0.34 +1.4 4,871,536 + AO356_21760 0.38 -1.1 4,871,537 - AO356_21760 0.38 -1.3 4,871,676 + AO356_21760 0.52 -0.1 4,871,677 - AO356_21760 0.52 +0.5 4,871,704 + AO356_21760 0.55 -0.3 4,871,704 + AO356_21760 0.55 -0.9 4,871,705 - AO356_21760 0.55 -0.2 4,871,705 - AO356_21760 0.55 +1.8 4,871,803 + AO356_21760 0.65 -0.3 4,871,803 + AO356_21760 0.65 +1.5 4,871,804 - AO356_21760 0.66 -0.7 4,871,970 + AO356_21760 0.83 +0.1 4,871,970 + AO356_21760 0.83 -0.5 4,872,032 + AO356_21760 0.89 +0.9 4,872,032 + AO356_21760 0.89 +0.3 4,872,032 + AO356_21760 0.89 +0.5 4,872,033 - AO356_21760 0.89 +1.3
Or see this region's nucleotide sequence