Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20750

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20740 and AO356_20745 are separated by 47 nucleotidesAO356_20745 and AO356_20750 are separated by 47 nucleotides AO356_20740: AO356_20740 - cell wall assembly protein, at 4,623,384 to 4,624,007 _20740 AO356_20745: AO356_20745 - hypothetical protein, at 4,624,055 to 4,624,741 _20745 AO356_20750: AO356_20750 - hypothetical protein, at 4,624,789 to 4,625,178 _20750 Position (kb) 4624 4625 4626Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.804 kb on + strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.805 kb on - strand, within AO356_20740at 4623.834 kb on + strand, within AO356_20740at 4623.835 kb on - strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.849 kb on + strand, within AO356_20740at 4623.850 kb on - strand, within AO356_20740at 4623.854 kb on - strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.878 kb on + strand, within AO356_20740at 4623.879 kb on - strand, within AO356_20740at 4624.119 kb on + strandat 4624.120 kb on - strandat 4624.132 kb on + strand, within AO356_20745at 4624.134 kb on + strand, within AO356_20745at 4624.134 kb on + strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.135 kb on - strand, within AO356_20745at 4624.188 kb on + strand, within AO356_20745at 4624.212 kb on + strand, within AO356_20745at 4624.236 kb on + strand, within AO356_20745at 4624.236 kb on + strand, within AO356_20745at 4624.350 kb on + strand, within AO356_20745at 4624.350 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.449 kb on + strand, within AO356_20745at 4624.561 kb on - strand, within AO356_20745at 4624.561 kb on - strand, within AO356_20745at 4624.602 kb on + strand, within AO356_20745at 4624.602 kb on + strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.603 kb on - strand, within AO356_20745at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.846 kb on + strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.847 kb on - strand, within AO356_20750at 4624.874 kb on - strand, within AO356_20750at 4624.886 kb on + strand, within AO356_20750at 4624.887 kb on - strand, within AO356_20750at 4624.950 kb on - strand, within AO356_20750at 4624.950 kb on - strand, within AO356_20750at 4624.976 kb on - strand, within AO356_20750at 4625.149 kb on + strandat 4625.149 kb on + strandat 4625.150 kb on - strandat 4625.150 kb on - strandat 4625.150 kb on - strandat 4625.150 kb on - strandat 4625.150 kb on - strandat 4625.155 kb on + strandat 4625.155 kb on + strandat 4625.156 kb on - strandat 4625.156 kb on - strandat 4625.156 kb on - strandat 4625.174 kb on + strandat 4625.174 kb on + strandat 4625.174 kb on + strandat 4625.175 kb on - strandat 4625.175 kb on - strandat 4625.208 kb on + strandat 4625.213 kb on + strandat 4625.214 kb on - strandat 4625.214 kb on - strandat 4625.217 kb on + strandat 4625.218 kb on - strandat 4625.245 kb on + strandat 4625.246 kb on - strandat 4625.246 kb on - strandat 4625.296 kb on + strandat 4625.297 kb on - strandat 4625.297 kb on - strandat 4625.297 kb on - strandat 4625.338 kb on + strandat 4625.338 kb on + strandat 4625.338 kb on + strandat 4625.374 kb on + strandat 4625.375 kb on - strandat 4625.465 kb on - strandat 4625.474 kb on + strandat 4625.474 kb on + strandat 4625.475 kb on - strandat 4625.496 kb on + strandat 4625.497 kb on - strandat 4625.497 kb on - strandat 4625.497 kb on - strandat 4625.607 kb on - strandat 4625.623 kb on - strandat 4625.632 kb on - strandat 4625.686 kb on + strandat 4625.686 kb on + strandat 4625.687 kb on - strandat 4625.697 kb on + strandat 4625.697 kb on + strandat 4625.697 kb on + strandat 4625.698 kb on - strandat 4625.698 kb on - strandat 4625.698 kb on - strandat 4625.726 kb on + strandat 4625.726 kb on + strandat 4625.726 kb on + strandat 4625.727 kb on - strandat 4625.727 kb on - strandat 4625.847 kb on + strandat 4625.847 kb on + strandat 4625.852 kb on + strandat 4625.852 kb on + strandat 4625.853 kb on - strandat 4625.904 kb on + strandat 4625.906 kb on + strandat 4625.922 kb on - strandat 4625.922 kb on - strandat 4625.988 kb on + strandat 4625.988 kb on + strandat 4625.988 kb on + strandat 4625.988 kb on + strandat 4625.989 kb on - strandat 4625.989 kb on - strandat 4625.989 kb on - strandat 4625.989 kb on - strandat 4626.002 kb on + strandat 4626.003 kb on - strandat 4626.008 kb on + strandat 4626.108 kb on - strandat 4626.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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4,623,804 + AO356_20740 0.67 -2.3
4,623,804 + AO356_20740 0.67 -0.7
4,623,804 + AO356_20740 0.67 +0.4
4,623,804 + AO356_20740 0.67 +1.1
4,623,804 + AO356_20740 0.67 +0.4
4,623,805 - AO356_20740 0.67 +0.9
4,623,805 - AO356_20740 0.67 -1.7
4,623,805 - AO356_20740 0.67 -2.9
4,623,805 - AO356_20740 0.67 +0.1
4,623,805 - AO356_20740 0.67 +0.3
4,623,805 - AO356_20740 0.67 -1.8
4,623,805 - AO356_20740 0.67 +0.4
4,623,834 + AO356_20740 0.72 -2.3
4,623,835 - AO356_20740 0.72 -0.6
4,623,849 + AO356_20740 0.75 -1.1
4,623,849 + AO356_20740 0.75 -0.1
4,623,849 + AO356_20740 0.75 +1.3
4,623,849 + AO356_20740 0.75 +0.6
4,623,849 + AO356_20740 0.75 +0.5
4,623,849 + AO356_20740 0.75 +0.2
4,623,849 + AO356_20740 0.75 +0.6
4,623,849 + AO356_20740 0.75 +1.6
4,623,850 - AO356_20740 0.75 +1.4
4,623,854 - AO356_20740 0.75 -0.2
4,623,878 + AO356_20740 0.79 +1.2
4,623,878 + AO356_20740 0.79 -1.1
4,623,878 + AO356_20740 0.79 +1.5
4,623,878 + AO356_20740 0.79 -0.1
4,623,879 - AO356_20740 0.79 -0.2
4,624,119 + +0.6
4,624,120 - +1.0
4,624,132 + AO356_20745 0.11 -0.5
4,624,134 + AO356_20745 0.11 +2.0
4,624,134 + AO356_20745 0.11 +1.0
4,624,135 - AO356_20745 0.12 +0.9
4,624,135 - AO356_20745 0.12 -0.1
4,624,135 - AO356_20745 0.12 -1.0
4,624,135 - AO356_20745 0.12 +1.0
4,624,135 - AO356_20745 0.12 +2.3
4,624,188 + AO356_20745 0.19 -1.3
4,624,212 + AO356_20745 0.23 -0.4
4,624,236 + AO356_20745 0.26 +0.5
4,624,236 + AO356_20745 0.26 -0.5
4,624,350 + AO356_20745 0.43 +0.6
4,624,350 + AO356_20745 0.43 -1.1
4,624,449 + AO356_20745 0.57 -2.2
4,624,449 + AO356_20745 0.57 +0.5
4,624,449 + AO356_20745 0.57 -0.1
4,624,449 + AO356_20745 0.57 +0.9
4,624,449 + AO356_20745 0.57 -0.2
4,624,449 + AO356_20745 0.57 -0.7
4,624,561 - AO356_20745 0.74 +0.6
4,624,561 - AO356_20745 0.74 -1.8
4,624,602 + AO356_20745 0.80 -0.2
4,624,602 + AO356_20745 0.80 +1.1
4,624,603 - AO356_20745 0.80 -0.1
4,624,603 - AO356_20745 0.80 +0.5
4,624,603 - AO356_20745 0.80 -2.5
4,624,603 - AO356_20745 0.80 -0.4
4,624,603 - AO356_20745 0.80 -0.5
4,624,603 - AO356_20745 0.80 +1.6
4,624,846 + AO356_20750 0.15 +0.8
4,624,846 + AO356_20750 0.15 -1.4
4,624,846 + AO356_20750 0.15 +0.3
4,624,846 + AO356_20750 0.15 +1.2
4,624,846 + AO356_20750 0.15 +0.6
4,624,847 - AO356_20750 0.15 +0.9
4,624,847 - AO356_20750 0.15 +1.6
4,624,847 - AO356_20750 0.15 +0.4
4,624,847 - AO356_20750 0.15 +0.3
4,624,847 - AO356_20750 0.15 -2.0
4,624,847 - AO356_20750 0.15 -0.5
4,624,874 - AO356_20750 0.22 -0.0
4,624,886 + AO356_20750 0.25 +1.1
4,624,887 - AO356_20750 0.25 +0.7
4,624,950 - AO356_20750 0.41 +1.3
4,624,950 - AO356_20750 0.41 +1.2
4,624,976 - AO356_20750 0.48 -0.2
4,625,149 + -2.1
4,625,149 + +0.4
4,625,150 - +0.3
4,625,150 - -1.4
4,625,150 - -0.9
4,625,150 - +1.0
4,625,150 - -0.7
4,625,155 + +2.1
4,625,155 + -1.8
4,625,156 - -1.4
4,625,156 - -0.1
4,625,156 - -0.6
4,625,174 + +0.0
4,625,174 + -1.4
4,625,174 + +0.4
4,625,175 - -2.2
4,625,175 - -0.6
4,625,208 + -0.8
4,625,213 + +1.3
4,625,214 - -2.2
4,625,214 - -0.2
4,625,217 + -1.1
4,625,218 - -1.5
4,625,245 + +0.0
4,625,246 - -0.4
4,625,246 - +0.3
4,625,296 + +1.1
4,625,297 - -1.8
4,625,297 - -1.4
4,625,297 - -0.6
4,625,338 + +0.8
4,625,338 + -0.7
4,625,338 + +0.7
4,625,374 + +1.2
4,625,375 - +0.6
4,625,465 - +0.7
4,625,474 + -1.7
4,625,474 + -1.9
4,625,475 - +1.5
4,625,496 + -1.0
4,625,497 - -0.4
4,625,497 - +0.2
4,625,497 - -0.3
4,625,607 - -1.3
4,625,623 - +1.4
4,625,632 - +0.9
4,625,686 + +0.6
4,625,686 + -0.5
4,625,687 - -1.0
4,625,697 + -0.2
4,625,697 + -0.2
4,625,697 + +1.0
4,625,698 - +1.7
4,625,698 - -0.0
4,625,698 - -0.8
4,625,726 + +0.1
4,625,726 + +0.2
4,625,726 + -2.1
4,625,727 - -1.1
4,625,727 - +0.0
4,625,847 + +0.7
4,625,847 + +0.7
4,625,852 + -2.6
4,625,852 + -1.0
4,625,853 - +0.2
4,625,904 + +0.6
4,625,906 + +0.2
4,625,922 - -1.2
4,625,922 - +1.0
4,625,988 + +0.6
4,625,988 + +0.5
4,625,988 + -1.2
4,625,988 + +0.1
4,625,989 - +0.1
4,625,989 - +0.5
4,625,989 - -0.0
4,625,989 - +0.1
4,626,002 + +1.5
4,626,003 - -0.3
4,626,008 + -2.3
4,626,108 - -1.6
4,626,176 - -0.7

Or see this region's nucleotide sequence