Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17560

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17560 and AO356_17565 are separated by 40 nucleotidesAO356_17565 and AO356_17570 are separated by 146 nucleotides AO356_17560: AO356_17560 - hypothetical protein, at 3,960,120 to 3,960,626 _17560 AO356_17565: AO356_17565 - ADP-ribose pyrophosphatase, at 3,960,667 to 3,961,218 _17565 AO356_17570: AO356_17570 - DNA mismatch repair protein MutT, at 3,961,365 to 3,961,964 _17570 Position (kb) 3960 3961Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3959.145 kb on - strandat 3959.145 kb on - strandat 3959.147 kb on + strandat 3959.209 kb on + strandat 3959.209 kb on + strandat 3959.210 kb on - strandat 3959.210 kb on - strandat 3959.210 kb on - strandat 3959.210 kb on - strandat 3959.220 kb on - strandat 3959.220 kb on - strandat 3959.220 kb on - strandat 3959.220 kb on - strandat 3959.220 kb on - strandat 3959.223 kb on + strandat 3959.223 kb on + strandat 3959.224 kb on - strandat 3959.224 kb on - strandat 3959.224 kb on - strandat 3959.253 kb on - strandat 3959.286 kb on + strandat 3959.287 kb on - strandat 3959.287 kb on - strandat 3959.555 kb on + strandat 3959.572 kb on + strandat 3960.221 kb on + strand, within AO356_17560at 3960.221 kb on + strand, within AO356_17560at 3960.355 kb on + strand, within AO356_17560at 3960.355 kb on + strand, within AO356_17560at 3960.356 kb on - strand, within AO356_17560at 3960.469 kb on + strand, within AO356_17560at 3960.469 kb on + strand, within AO356_17560at 3960.556 kb on + strand, within AO356_17560at 3960.556 kb on + strand, within AO356_17560at 3960.556 kb on + strand, within AO356_17560at 3960.556 kb on + strand, within AO356_17560at 3960.556 kb on + strand, within AO356_17560at 3960.556 kb on + strand, within AO356_17560at 3960.557 kb on - strand, within AO356_17560at 3960.557 kb on - strand, within AO356_17560at 3960.658 kb on + strandat 3960.658 kb on + strandat 3960.658 kb on + strandat 3960.659 kb on - strandat 3960.719 kb on + strandat 3960.719 kb on + strandat 3960.743 kb on + strand, within AO356_17565at 3960.743 kb on + strand, within AO356_17565at 3960.743 kb on + strand, within AO356_17565at 3960.744 kb on - strand, within AO356_17565at 3960.744 kb on - strand, within AO356_17565at 3960.749 kb on + strand, within AO356_17565at 3960.749 kb on + strand, within AO356_17565at 3960.749 kb on + strand, within AO356_17565at 3960.749 kb on + strand, within AO356_17565at 3960.750 kb on - strand, within AO356_17565at 3960.750 kb on - strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.880 kb on + strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.881 kb on - strand, within AO356_17565at 3960.886 kb on + strand, within AO356_17565at 3960.886 kb on + strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.887 kb on - strand, within AO356_17565at 3960.897 kb on + strand, within AO356_17565at 3960.898 kb on - strand, within AO356_17565at 3960.918 kb on + strand, within AO356_17565at 3960.918 kb on + strand, within AO356_17565at 3960.919 kb on - strand, within AO356_17565at 3960.919 kb on - strand, within AO356_17565at 3960.919 kb on - strand, within AO356_17565at 3960.919 kb on - strand, within AO356_17565at 3960.919 kb on - strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.920 kb on + strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3960.921 kb on - strand, within AO356_17565at 3961.244 kb on - strandat 3961.343 kb on - strandat 3961.349 kb on + strandat 3961.349 kb on + strandat 3961.350 kb on - strandat 3961.350 kb on - strandat 3961.378 kb on + strandat 3961.378 kb on + strandat 3961.379 kb on - strandat 3961.379 kb on - strandat 3961.390 kb on + strandat 3961.400 kb on + strandat 3961.401 kb on - strandat 3961.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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3,959,145 - +1.5
3,959,145 - -0.6
3,959,147 + -0.0
3,959,209 + +1.1
3,959,209 + -1.2
3,959,210 - +0.0
3,959,210 - +0.1
3,959,210 - +0.8
3,959,210 - -2.0
3,959,220 - +0.4
3,959,220 - +1.8
3,959,220 - -0.5
3,959,220 - -0.3
3,959,220 - +0.4
3,959,223 + +1.1
3,959,223 + +1.4
3,959,224 - +2.4
3,959,224 - -1.1
3,959,224 - +0.1
3,959,253 - -0.3
3,959,286 + -0.4
3,959,287 - +3.6
3,959,287 - +0.5
3,959,555 + -0.8
3,959,572 + -0.8
3,960,221 + AO356_17560 0.20 +0.5
3,960,221 + AO356_17560 0.20 +2.6
3,960,355 + AO356_17560 0.46 +1.8
3,960,355 + AO356_17560 0.46 +1.1
3,960,356 - AO356_17560 0.47 -1.6
3,960,469 + AO356_17560 0.69 +0.2
3,960,469 + AO356_17560 0.69 +1.6
3,960,556 + AO356_17560 0.86 -0.2
3,960,556 + AO356_17560 0.86 +2.0
3,960,556 + AO356_17560 0.86 -1.3
3,960,556 + AO356_17560 0.86 -2.4
3,960,556 + AO356_17560 0.86 +0.2
3,960,556 + AO356_17560 0.86 -0.1
3,960,557 - AO356_17560 0.86 -0.1
3,960,557 - AO356_17560 0.86 +1.8
3,960,658 + -1.6
3,960,658 + -0.6
3,960,658 + -0.2
3,960,659 - +1.5
3,960,719 + -0.2
3,960,719 + +0.4
3,960,743 + AO356_17565 0.14 -0.8
3,960,743 + AO356_17565 0.14 +0.4
3,960,743 + AO356_17565 0.14 +0.8
3,960,744 - AO356_17565 0.14 +1.2
3,960,744 - AO356_17565 0.14 -0.7
3,960,749 + AO356_17565 0.15 +0.5
3,960,749 + AO356_17565 0.15 -0.9
3,960,749 + AO356_17565 0.15 +0.8
3,960,749 + AO356_17565 0.15 +1.6
3,960,750 - AO356_17565 0.15 +0.4
3,960,750 - AO356_17565 0.15 +0.8
3,960,880 + AO356_17565 0.39 -0.1
3,960,880 + AO356_17565 0.39 -0.3
3,960,880 + AO356_17565 0.39 +0.8
3,960,880 + AO356_17565 0.39 +1.0
3,960,880 + AO356_17565 0.39 -1.2
3,960,880 + AO356_17565 0.39 +1.2
3,960,880 + AO356_17565 0.39 +0.4
3,960,880 + AO356_17565 0.39 -0.2
3,960,880 + AO356_17565 0.39 +1.4
3,960,880 + AO356_17565 0.39 -2.3
3,960,881 - AO356_17565 0.39 -0.7
3,960,881 - AO356_17565 0.39 +0.6
3,960,881 - AO356_17565 0.39 +0.1
3,960,881 - AO356_17565 0.39 -1.6
3,960,881 - AO356_17565 0.39 +0.5
3,960,881 - AO356_17565 0.39 -0.2
3,960,881 - AO356_17565 0.39 +1.9
3,960,881 - AO356_17565 0.39 +0.1
3,960,881 - AO356_17565 0.39 +0.3
3,960,886 + AO356_17565 0.40 +2.6
3,960,886 + AO356_17565 0.40 +1.4
3,960,887 - AO356_17565 0.40 +0.0
3,960,887 - AO356_17565 0.40 +0.4
3,960,887 - AO356_17565 0.40 +0.8
3,960,887 - AO356_17565 0.40 +0.1
3,960,887 - AO356_17565 0.40 -0.7
3,960,887 - AO356_17565 0.40 -0.1
3,960,887 - AO356_17565 0.40 -1.4
3,960,887 - AO356_17565 0.40 -1.8
3,960,897 + AO356_17565 0.42 -0.8
3,960,898 - AO356_17565 0.42 +1.3
3,960,918 + AO356_17565 0.45 -0.5
3,960,918 + AO356_17565 0.45 -1.0
3,960,919 - AO356_17565 0.46 +1.0
3,960,919 - AO356_17565 0.46 +0.6
3,960,919 - AO356_17565 0.46 -0.4
3,960,919 - AO356_17565 0.46 -1.3
3,960,919 - AO356_17565 0.46 -0.5
3,960,920 + AO356_17565 0.46 -2.0
3,960,920 + AO356_17565 0.46 +1.3
3,960,920 + AO356_17565 0.46 +0.2
3,960,920 + AO356_17565 0.46 -0.1
3,960,920 + AO356_17565 0.46 +0.5
3,960,920 + AO356_17565 0.46 +0.2
3,960,920 + AO356_17565 0.46 +0.0
3,960,920 + AO356_17565 0.46 -1.8
3,960,920 + AO356_17565 0.46 +1.7
3,960,920 + AO356_17565 0.46 +0.7
3,960,920 + AO356_17565 0.46 +0.8
3,960,920 + AO356_17565 0.46 -0.5
3,960,920 + AO356_17565 0.46 +0.9
3,960,920 + AO356_17565 0.46 -0.1
3,960,920 + AO356_17565 0.46 +0.0
3,960,920 + AO356_17565 0.46 +1.1
3,960,920 + AO356_17565 0.46 +0.5
3,960,921 - AO356_17565 0.46 -2.0
3,960,921 - AO356_17565 0.46 -0.2
3,960,921 - AO356_17565 0.46 -3.3
3,960,921 - AO356_17565 0.46 -0.7
3,960,921 - AO356_17565 0.46 -1.1
3,960,921 - AO356_17565 0.46 +0.2
3,960,921 - AO356_17565 0.46 -1.0
3,961,244 - +0.3
3,961,343 - +0.9
3,961,349 + +0.7
3,961,349 + -1.2
3,961,350 - -1.9
3,961,350 - +1.1
3,961,378 + -2.0
3,961,378 + -0.2
3,961,379 - +0.6
3,961,379 - +1.2
3,961,390 + -1.4
3,961,400 + +0.2
3,961,401 - +0.5
3,961,401 - -2.6

Or see this region's nucleotide sequence