Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16715 and AO356_16720 are separated by 186 nucleotides AO356_16720 and AO356_16725 are separated by 294 nucleotides AO356_16725 and AO356_16730 overlap by 8 nucleotides
AO356_16715: AO356_16715 - thioredoxin reductase, at 3,770,167 to 3,771,129
_16715
AO356_16720: AO356_16720 - 4-aminobutyrate aminotransferase, at 3,771,316 to 3,772,566
_16720
AO356_16725: AO356_16725 - HopJ type III effector protein, at 3,772,861 to 3,773,199
_16725
AO356_16730: AO356_16730 - cell division protein DedD, at 3,773,192 to 3,773,488
_16730
Position (kb)
3771
3772
3773 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3771.169 kb on - strand at 3771.179 kb on + strand at 3771.180 kb on - strand at 3771.180 kb on - strand at 3771.228 kb on + strand at 3771.228 kb on + strand at 3771.228 kb on + strand at 3771.228 kb on + strand at 3771.229 kb on - strand at 3771.557 kb on + strand, within AO356_16720 at 3771.557 kb on + strand, within AO356_16720 at 3771.557 kb on + strand, within AO356_16720 at 3771.558 kb on - strand, within AO356_16720 at 3771.558 kb on - strand, within AO356_16720 at 3771.565 kb on + strand, within AO356_16720 at 3771.701 kb on + strand, within AO356_16720 at 3771.701 kb on + strand, within AO356_16720 at 3771.702 kb on - strand, within AO356_16720 at 3771.702 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.095 kb on - strand, within AO356_16720 at 3772.130 kb on + strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.131 kb on - strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.337 kb on + strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.338 kb on - strand, within AO356_16720 at 3772.367 kb on + strand, within AO356_16720 at 3772.367 kb on + strand, within AO356_16720 at 3772.466 kb on + strand at 3772.467 kb on - strand at 3772.467 kb on - strand at 3772.467 kb on - strand at 3772.467 kb on - strand at 3772.604 kb on + strand at 3772.604 kb on + strand at 3772.605 kb on - strand at 3772.605 kb on - strand at 3772.605 kb on - strand at 3772.637 kb on + strand at 3772.637 kb on + strand at 3772.638 kb on - strand at 3772.638 kb on - strand at 3772.657 kb on + strand at 3772.687 kb on - strand at 3772.852 kb on + strand at 3772.929 kb on + strand, within AO356_16725 at 3772.929 kb on + strand, within AO356_16725 at 3772.930 kb on - strand, within AO356_16725 at 3773.109 kb on - strand, within AO356_16725 at 3773.184 kb on + strand at 3773.253 kb on + strand, within AO356_16730 at 3773.254 kb on - strand, within AO356_16730 at 3773.254 kb on - strand, within AO356_16730 at 3773.274 kb on + strand, within AO356_16730 at 3773.286 kb on + strand, within AO356_16730 at 3773.286 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.349 kb on + strand, within AO356_16730 at 3773.350 kb on - strand, within AO356_16730 at 3773.350 kb on - strand, within AO356_16730 at 3773.543 kb on + strand at 3773.565 kb on + strand at 3773.565 kb on + strand at 3773.565 kb on + strand at 3773.565 kb on + strand at 3773.566 kb on - strand at 3773.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 3,771,169 - +0.6 3,771,179 + +0.7 3,771,180 - +1.6 3,771,180 - -1.4 3,771,228 + -1.1 3,771,228 + -0.6 3,771,228 + +1.1 3,771,228 + +0.5 3,771,229 - -0.0 3,771,557 + AO356_16720 0.19 +0.3 3,771,557 + AO356_16720 0.19 -0.2 3,771,557 + AO356_16720 0.19 -2.5 3,771,558 - AO356_16720 0.19 +0.1 3,771,558 - AO356_16720 0.19 -1.6 3,771,565 + AO356_16720 0.20 -0.4 3,771,701 + AO356_16720 0.31 -0.6 3,771,701 + AO356_16720 0.31 -0.2 3,771,702 - AO356_16720 0.31 +0.3 3,771,702 - AO356_16720 0.31 -0.8 3,772,095 - AO356_16720 0.62 +0.5 3,772,095 - AO356_16720 0.62 -0.3 3,772,095 - AO356_16720 0.62 -0.7 3,772,095 - AO356_16720 0.62 -0.1 3,772,095 - AO356_16720 0.62 +1.9 3,772,095 - AO356_16720 0.62 +0.1 3,772,130 + AO356_16720 0.65 +0.7 3,772,131 - AO356_16720 0.65 +0.7 3,772,131 - AO356_16720 0.65 -0.2 3,772,131 - AO356_16720 0.65 -1.5 3,772,131 - AO356_16720 0.65 -0.2 3,772,131 - AO356_16720 0.65 -1.7 3,772,337 + AO356_16720 0.82 -1.8 3,772,337 + AO356_16720 0.82 +0.6 3,772,337 + AO356_16720 0.82 +0.4 3,772,337 + AO356_16720 0.82 +0.1 3,772,337 + AO356_16720 0.82 -1.9 3,772,337 + AO356_16720 0.82 +0.1 3,772,337 + AO356_16720 0.82 +0.7 3,772,337 + AO356_16720 0.82 -0.1 3,772,338 - AO356_16720 0.82 +0.4 3,772,338 - AO356_16720 0.82 -0.7 3,772,338 - AO356_16720 0.82 +0.2 3,772,338 - AO356_16720 0.82 -1.1 3,772,338 - AO356_16720 0.82 -0.1 3,772,338 - AO356_16720 0.82 -0.2 3,772,338 - AO356_16720 0.82 -0.4 3,772,338 - AO356_16720 0.82 -1.3 3,772,338 - AO356_16720 0.82 +1.0 3,772,338 - AO356_16720 0.82 +0.3 3,772,338 - AO356_16720 0.82 -1.8 3,772,367 + AO356_16720 0.84 -0.6 3,772,367 + AO356_16720 0.84 -0.2 3,772,466 + +0.5 3,772,467 - +0.4 3,772,467 - +0.4 3,772,467 - +1.9 3,772,467 - -2.3 3,772,604 + -0.7 3,772,604 + +1.5 3,772,605 - +1.0 3,772,605 - +0.5 3,772,605 - +1.0 3,772,637 + -2.5 3,772,637 + +0.8 3,772,638 - -0.2 3,772,638 - +2.3 3,772,657 + +0.9 3,772,687 - +0.1 3,772,852 + -1.1 3,772,929 + AO356_16725 0.20 -1.1 3,772,929 + AO356_16725 0.20 +0.4 3,772,930 - AO356_16725 0.20 -2.2 3,773,109 - AO356_16725 0.73 +0.7 3,773,184 + +1.8 3,773,253 + AO356_16730 0.21 +1.8 3,773,254 - AO356_16730 0.21 -1.1 3,773,254 - AO356_16730 0.21 -1.2 3,773,274 + AO356_16730 0.28 -1.0 3,773,286 + AO356_16730 0.32 -1.3 3,773,286 + AO356_16730 0.32 +0.2 3,773,349 + AO356_16730 0.53 -0.3 3,773,349 + AO356_16730 0.53 -1.0 3,773,349 + AO356_16730 0.53 +2.4 3,773,349 + AO356_16730 0.53 -0.4 3,773,349 + AO356_16730 0.53 -0.7 3,773,349 + AO356_16730 0.53 -0.6 3,773,350 - AO356_16730 0.53 -0.5 3,773,350 - AO356_16730 0.53 +0.1 3,773,543 + -0.2 3,773,565 + -2.1 3,773,565 + -0.5 3,773,565 + +0.2 3,773,565 + +2.1 3,773,566 - -1.7 3,773,566 - +0.7
Or see this region's nucleotide sequence