Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16065

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16060 and AO356_16065 are separated by 365 nucleotidesAO356_16065 and AO356_16070 are separated by 3 nucleotides AO356_16060: AO356_16060 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 3,632,134 to 3,632,934 _16060 AO356_16065: AO356_16065 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 3,633,300 to 3,633,785 _16065 AO356_16070: AO356_16070 - poly(A) polymerase, at 3,633,789 to 3,635,186 _16070 Position (kb) 3633 3634Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3632.487 kb on - strand, within AO356_16060at 3632.487 kb on - strand, within AO356_16060at 3632.500 kb on - strand, within AO356_16060at 3632.500 kb on - strand, within AO356_16060at 3632.500 kb on - strand, within AO356_16060at 3632.667 kb on - strand, within AO356_16060at 3632.735 kb on + strand, within AO356_16060at 3632.736 kb on - strand, within AO356_16060at 3632.736 kb on - strand, within AO356_16060at 3632.736 kb on - strand, within AO356_16060at 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.862 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.926 kb on - strandat 3632.949 kb on + strandat 3632.949 kb on + strandat 3632.991 kb on - strandat 3632.991 kb on - strandat 3632.991 kb on - strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.994 kb on + strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.995 kb on - strandat 3632.996 kb on + strandat 3633.011 kb on + strandat 3633.011 kb on + strandat 3633.011 kb on + strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.012 kb on - strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.026 kb on + strandat 3633.027 kb on - strandat 3633.027 kb on - strandat 3633.027 kb on - strandat 3633.048 kb on - strandat 3633.048 kb on - strandat 3633.048 kb on - strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.076 kb on + strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.077 kb on - strandat 3633.078 kb on + strandat 3633.078 kb on + strandat 3633.078 kb on + strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.079 kb on - strandat 3633.156 kb on + strandat 3633.156 kb on + strandat 3633.156 kb on + strandat 3633.157 kb on - strandat 3633.157 kb on - strandat 3633.773 kb on - strandat 3633.777 kb on - strandat 3633.777 kb on - strandat 3633.777 kb on - strandat 3633.790 kb on + strandat 3634.333 kb on + strand, within AO356_16070at 3634.333 kb on + strand, within AO356_16070at 3634.333 kb on + strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.334 kb on - strand, within AO356_16070at 3634.691 kb on - strand, within AO356_16070at 3634.691 kb on - strand, within AO356_16070at 3634.691 kb on - strand, within AO356_16070at 3634.693 kb on + strand, within AO356_16070at 3634.694 kb on - strand, within AO356_16070at 3634.747 kb on + strand, within AO356_16070at 3634.748 kb on - strand, within AO356_16070at 3634.767 kb on - strand, within AO356_16070at 3634.767 kb on - strand, within AO356_16070

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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3,632,487 - AO356_16060 0.44 -0.7
3,632,487 - AO356_16060 0.44 -1.1
3,632,500 - AO356_16060 0.46 +0.0
3,632,500 - AO356_16060 0.46 -0.4
3,632,500 - AO356_16060 0.46 +0.0
3,632,667 - AO356_16060 0.67 -0.6
3,632,735 + AO356_16060 0.75 -0.6
3,632,736 - AO356_16060 0.75 -0.6
3,632,736 - AO356_16060 0.75 -0.9
3,632,736 - AO356_16060 0.75 +1.0
3,632,862 - +1.0
3,632,862 - -1.5
3,632,862 - +1.2
3,632,862 - +0.6
3,632,862 - +1.0
3,632,926 - -0.1
3,632,926 - -2.2
3,632,926 - +1.0
3,632,926 - -1.2
3,632,926 - +1.7
3,632,926 - -0.9
3,632,926 - -0.3
3,632,949 + +1.8
3,632,949 + -1.7
3,632,991 - -0.6
3,632,991 - +1.5
3,632,991 - -0.6
3,632,994 + +1.9
3,632,994 + -0.9
3,632,994 + +0.7
3,632,994 + +0.3
3,632,994 + +1.6
3,632,995 - +0.3
3,632,995 - -2.1
3,632,995 - -0.9
3,632,995 - +0.5
3,632,995 - +0.9
3,632,995 - +1.1
3,632,995 - +2.1
3,632,995 - -0.5
3,632,995 - +0.1
3,632,995 - +0.5
3,632,995 - +0.0
3,632,996 + -1.0
3,633,011 + -1.2
3,633,011 + -0.1
3,633,011 + +1.0
3,633,012 - +0.8
3,633,012 - +1.1
3,633,012 - -0.5
3,633,012 - +0.3
3,633,012 - -0.1
3,633,026 + +0.3
3,633,026 + -0.9
3,633,026 + +3.3
3,633,026 + -0.2
3,633,026 + +1.6
3,633,026 + -1.3
3,633,027 - -0.6
3,633,027 - +0.2
3,633,027 - -1.2
3,633,048 - +1.1
3,633,048 - +1.2
3,633,048 - -0.8
3,633,076 + +0.3
3,633,076 + -0.9
3,633,076 + +1.2
3,633,076 + +1.0
3,633,076 + +0.6
3,633,077 - +1.8
3,633,077 - +0.1
3,633,077 - -0.4
3,633,077 - -1.0
3,633,077 - -1.8
3,633,078 + -0.7
3,633,078 + -0.2
3,633,078 + -0.6
3,633,079 - +0.3
3,633,079 - -0.1
3,633,079 - +0.0
3,633,079 - -0.8
3,633,079 - +1.7
3,633,079 - -0.1
3,633,156 + -1.3
3,633,156 + +0.6
3,633,156 + +2.4
3,633,157 - +2.3
3,633,157 - +1.6
3,633,773 - -0.4
3,633,777 - +1.0
3,633,777 - +0.6
3,633,777 - +1.0
3,633,790 + +2.6
3,634,333 + AO356_16070 0.39 +1.6
3,634,333 + AO356_16070 0.39 +0.6
3,634,333 + AO356_16070 0.39 +2.0
3,634,334 - AO356_16070 0.39 +0.3
3,634,334 - AO356_16070 0.39 -0.3
3,634,334 - AO356_16070 0.39 -1.2
3,634,334 - AO356_16070 0.39 +1.0
3,634,334 - AO356_16070 0.39 +0.6
3,634,691 - AO356_16070 0.65 +1.0
3,634,691 - AO356_16070 0.65 +0.3
3,634,691 - AO356_16070 0.65 -0.5
3,634,693 + AO356_16070 0.65 +1.6
3,634,694 - AO356_16070 0.65 +2.8
3,634,747 + AO356_16070 0.69 +2.6
3,634,748 - AO356_16070 0.69 -2.4
3,634,767 - AO356_16070 0.70 +0.0
3,634,767 - AO356_16070 0.70 -0.2

Or see this region's nucleotide sequence