Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15235 and AO356_15240 overlap by 4 nucleotides AO356_15240 and AO356_15245 overlap by 8 nucleotides AO356_15245 and AO356_15250 are separated by 151 nucleotides AO356_15250 and AO356_15255 are separated by 27 nucleotides
AO356_15235: AO356_15235 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 3,453,756 to 3,455,105
_15235
AO356_15240: AO356_15240 - aromatic acid decarboxylase, at 3,455,102 to 3,455,749
_15240
AO356_15245: AO356_15245 - hypothetical protein, at 3,455,742 to 3,456,026
_15245
AO356_15250: AO356_15250 - nucleoside-diphosphate sugar epimerase, at 3,456,178 to 3,456,819
_15250
AO356_15255: AO356_15255 - peptidase C13, at 3,456,847 to 3,458,565
_15255
Position (kb)
3455
3456
3457 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3454.911 kb on + strand, within AO356_15235 at 3455.747 kb on + strand at 3455.747 kb on + strand at 3455.838 kb on + strand, within AO356_15245 at 3455.862 kb on + strand, within AO356_15245 at 3455.863 kb on - strand, within AO356_15245 at 3455.919 kb on + strand, within AO356_15245 at 3455.919 kb on + strand, within AO356_15245 at 3455.919 kb on + strand, within AO356_15245 at 3455.919 kb on + strand, within AO356_15245 at 3455.920 kb on - strand, within AO356_15245 at 3455.920 kb on - strand, within AO356_15245 at 3455.958 kb on - strand, within AO356_15245 at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.024 kb on + strand at 3456.025 kb on - strand at 3456.025 kb on - strand at 3456.025 kb on - strand at 3456.025 kb on - strand at 3456.025 kb on - strand at 3456.192 kb on + strand at 3456.193 kb on - strand at 3456.290 kb on + strand, within AO356_15250 at 3456.290 kb on + strand, within AO356_15250 at 3456.291 kb on - strand, within AO356_15250 at 3456.291 kb on - strand, within AO356_15250 at 3456.291 kb on - strand, within AO356_15250 at 3456.446 kb on + strand, within AO356_15250 at 3456.446 kb on + strand, within AO356_15250 at 3456.446 kb on + strand, within AO356_15250 at 3456.446 kb on + strand, within AO356_15250 at 3456.447 kb on - strand, within AO356_15250 at 3456.447 kb on - strand, within AO356_15250 at 3456.447 kb on - strand, within AO356_15250 at 3456.447 kb on - strand, within AO356_15250 at 3456.447 kb on - strand, within AO356_15250 at 3456.757 kb on + strand at 3456.757 kb on + strand at 3456.757 kb on + strand at 3456.757 kb on + strand at 3456.758 kb on - strand at 3456.758 kb on - strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.815 kb on + strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.816 kb on - strand at 3456.819 kb on + strand at 3456.819 kb on + strand at 3456.819 kb on + strand at 3456.819 kb on + strand at 3456.819 kb on + strand at 3456.819 kb on + strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.820 kb on - strand at 3456.848 kb on + strand at 3456.849 kb on - strand at 3456.849 kb on - strand at 3456.849 kb on - strand at 3456.849 kb on - strand at 3456.849 kb on - strand at 3456.882 kb on + strand at 3456.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 3,454,911 + AO356_15235 0.86 -0.2 3,455,747 + +0.4 3,455,747 + -2.3 3,455,838 + AO356_15245 0.34 -1.2 3,455,862 + AO356_15245 0.42 -0.8 3,455,863 - AO356_15245 0.42 +0.0 3,455,919 + AO356_15245 0.62 -0.7 3,455,919 + AO356_15245 0.62 +0.6 3,455,919 + AO356_15245 0.62 +0.1 3,455,919 + AO356_15245 0.62 +0.7 3,455,920 - AO356_15245 0.62 -1.5 3,455,920 - AO356_15245 0.62 -1.8 3,455,958 - AO356_15245 0.76 +1.2 3,456,024 + -2.2 3,456,024 + -0.2 3,456,024 + -0.5 3,456,024 + -2.1 3,456,024 + +0.6 3,456,024 + +1.7 3,456,024 + +1.3 3,456,024 + -0.2 3,456,024 + -1.2 3,456,024 + +0.1 3,456,024 + -1.0 3,456,024 + -0.6 3,456,025 - +0.7 3,456,025 - +1.8 3,456,025 - +1.4 3,456,025 - -0.6 3,456,025 - -1.2 3,456,192 + -0.9 3,456,193 - -0.4 3,456,290 + AO356_15250 0.17 +0.3 3,456,290 + AO356_15250 0.17 +0.8 3,456,291 - AO356_15250 0.18 +0.3 3,456,291 - AO356_15250 0.18 -2.6 3,456,291 - AO356_15250 0.18 -0.0 3,456,446 + AO356_15250 0.42 -0.7 3,456,446 + AO356_15250 0.42 +1.7 3,456,446 + AO356_15250 0.42 +0.4 3,456,446 + AO356_15250 0.42 +0.0 3,456,447 - AO356_15250 0.42 +0.8 3,456,447 - AO356_15250 0.42 -0.4 3,456,447 - AO356_15250 0.42 +0.0 3,456,447 - AO356_15250 0.42 -0.4 3,456,447 - AO356_15250 0.42 -1.3 3,456,757 + -0.3 3,456,757 + -1.4 3,456,757 + -1.0 3,456,757 + +0.2 3,456,758 - -2.6 3,456,758 - +0.8 3,456,815 + -1.0 3,456,815 + +0.4 3,456,815 + +0.5 3,456,815 + -0.6 3,456,815 + +0.2 3,456,815 + +0.3 3,456,815 + -0.3 3,456,815 + -0.3 3,456,815 + +0.6 3,456,815 + +1.5 3,456,816 - -0.3 3,456,816 - -1.7 3,456,816 - -0.5 3,456,816 - -1.4 3,456,816 - -1.3 3,456,816 - +0.9 3,456,816 - -0.3 3,456,816 - -1.3 3,456,816 - -0.8 3,456,816 - -0.5 3,456,819 + +1.9 3,456,819 + -1.7 3,456,819 + -0.1 3,456,819 + -0.1 3,456,819 + +0.7 3,456,819 + +1.2 3,456,820 - -0.6 3,456,820 - -2.0 3,456,820 - -0.6 3,456,820 - -1.8 3,456,820 - +0.5 3,456,820 - -0.7 3,456,820 - +2.4 3,456,820 - +1.0 3,456,820 - +0.4 3,456,820 - +1.3 3,456,820 - +0.9 3,456,848 + +0.6 3,456,849 - -0.7 3,456,849 - +2.1 3,456,849 - +0.4 3,456,849 - +0.8 3,456,849 - +1.6 3,456,882 + -2.1 3,456,883 - -1.2
Or see this region's nucleotide sequence