Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15245

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15235 and AO356_15240 overlap by 4 nucleotidesAO356_15240 and AO356_15245 overlap by 8 nucleotidesAO356_15245 and AO356_15250 are separated by 151 nucleotidesAO356_15250 and AO356_15255 are separated by 27 nucleotides AO356_15235: AO356_15235 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 3,453,756 to 3,455,105 _15235 AO356_15240: AO356_15240 - aromatic acid decarboxylase, at 3,455,102 to 3,455,749 _15240 AO356_15245: AO356_15245 - hypothetical protein, at 3,455,742 to 3,456,026 _15245 AO356_15250: AO356_15250 - nucleoside-diphosphate sugar epimerase, at 3,456,178 to 3,456,819 _15250 AO356_15255: AO356_15255 - peptidase C13, at 3,456,847 to 3,458,565 _15255 Position (kb) 3455 3456 3457Strain fitness (log2 ratio) -2 -1 0 1 2at 3454.911 kb on + strand, within AO356_15235at 3455.747 kb on + strandat 3455.747 kb on + strandat 3455.838 kb on + strand, within AO356_15245at 3455.862 kb on + strand, within AO356_15245at 3455.863 kb on - strand, within AO356_15245at 3455.919 kb on + strand, within AO356_15245at 3455.919 kb on + strand, within AO356_15245at 3455.919 kb on + strand, within AO356_15245at 3455.919 kb on + strand, within AO356_15245at 3455.920 kb on - strand, within AO356_15245at 3455.920 kb on - strand, within AO356_15245at 3455.958 kb on - strand, within AO356_15245at 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.024 kb on + strandat 3456.025 kb on - strandat 3456.025 kb on - strandat 3456.025 kb on - strandat 3456.025 kb on - strandat 3456.025 kb on - strandat 3456.192 kb on + strandat 3456.193 kb on - strandat 3456.290 kb on + strand, within AO356_15250at 3456.290 kb on + strand, within AO356_15250at 3456.291 kb on - strand, within AO356_15250at 3456.291 kb on - strand, within AO356_15250at 3456.291 kb on - strand, within AO356_15250at 3456.446 kb on + strand, within AO356_15250at 3456.446 kb on + strand, within AO356_15250at 3456.446 kb on + strand, within AO356_15250at 3456.446 kb on + strand, within AO356_15250at 3456.447 kb on - strand, within AO356_15250at 3456.447 kb on - strand, within AO356_15250at 3456.447 kb on - strand, within AO356_15250at 3456.447 kb on - strand, within AO356_15250at 3456.447 kb on - strand, within AO356_15250at 3456.757 kb on + strandat 3456.757 kb on + strandat 3456.757 kb on + strandat 3456.757 kb on + strandat 3456.758 kb on - strandat 3456.758 kb on - strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.815 kb on + strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.816 kb on - strandat 3456.819 kb on + strandat 3456.819 kb on + strandat 3456.819 kb on + strandat 3456.819 kb on + strandat 3456.819 kb on + strandat 3456.819 kb on + strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.820 kb on - strandat 3456.848 kb on + strandat 3456.849 kb on - strandat 3456.849 kb on - strandat 3456.849 kb on - strandat 3456.849 kb on - strandat 3456.849 kb on - strandat 3456.882 kb on + strandat 3456.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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3,454,911 + AO356_15235 0.86 -0.2
3,455,747 + +0.4
3,455,747 + -2.3
3,455,838 + AO356_15245 0.34 -1.2
3,455,862 + AO356_15245 0.42 -0.8
3,455,863 - AO356_15245 0.42 +0.0
3,455,919 + AO356_15245 0.62 -0.7
3,455,919 + AO356_15245 0.62 +0.6
3,455,919 + AO356_15245 0.62 +0.1
3,455,919 + AO356_15245 0.62 +0.7
3,455,920 - AO356_15245 0.62 -1.5
3,455,920 - AO356_15245 0.62 -1.8
3,455,958 - AO356_15245 0.76 +1.2
3,456,024 + -2.2
3,456,024 + -0.2
3,456,024 + -0.5
3,456,024 + -2.1
3,456,024 + +0.6
3,456,024 + +1.7
3,456,024 + +1.3
3,456,024 + -0.2
3,456,024 + -1.2
3,456,024 + +0.1
3,456,024 + -1.0
3,456,024 + -0.6
3,456,025 - +0.7
3,456,025 - +1.8
3,456,025 - +1.4
3,456,025 - -0.6
3,456,025 - -1.2
3,456,192 + -0.9
3,456,193 - -0.4
3,456,290 + AO356_15250 0.17 +0.3
3,456,290 + AO356_15250 0.17 +0.8
3,456,291 - AO356_15250 0.18 +0.3
3,456,291 - AO356_15250 0.18 -2.6
3,456,291 - AO356_15250 0.18 -0.0
3,456,446 + AO356_15250 0.42 -0.7
3,456,446 + AO356_15250 0.42 +1.7
3,456,446 + AO356_15250 0.42 +0.4
3,456,446 + AO356_15250 0.42 +0.0
3,456,447 - AO356_15250 0.42 +0.8
3,456,447 - AO356_15250 0.42 -0.4
3,456,447 - AO356_15250 0.42 +0.0
3,456,447 - AO356_15250 0.42 -0.4
3,456,447 - AO356_15250 0.42 -1.3
3,456,757 + -0.3
3,456,757 + -1.4
3,456,757 + -1.0
3,456,757 + +0.2
3,456,758 - -2.6
3,456,758 - +0.8
3,456,815 + -1.0
3,456,815 + +0.4
3,456,815 + +0.5
3,456,815 + -0.6
3,456,815 + +0.2
3,456,815 + +0.3
3,456,815 + -0.3
3,456,815 + -0.3
3,456,815 + +0.6
3,456,815 + +1.5
3,456,816 - -0.3
3,456,816 - -1.7
3,456,816 - -0.5
3,456,816 - -1.4
3,456,816 - -1.3
3,456,816 - +0.9
3,456,816 - -0.3
3,456,816 - -1.3
3,456,816 - -0.8
3,456,816 - -0.5
3,456,819 + +1.9
3,456,819 + -1.7
3,456,819 + -0.1
3,456,819 + -0.1
3,456,819 + +0.7
3,456,819 + +1.2
3,456,820 - -0.6
3,456,820 - -2.0
3,456,820 - -0.6
3,456,820 - -1.8
3,456,820 - +0.5
3,456,820 - -0.7
3,456,820 - +2.4
3,456,820 - +1.0
3,456,820 - +0.4
3,456,820 - +1.3
3,456,820 - +0.9
3,456,848 + +0.6
3,456,849 - -0.7
3,456,849 - +2.1
3,456,849 - +0.4
3,456,849 - +0.8
3,456,849 - +1.6
3,456,882 + -2.1
3,456,883 - -1.2

Or see this region's nucleotide sequence