Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14920

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14910 and AO356_14915 are separated by 186 nucleotidesAO356_14915 and AO356_14920 overlap by 4 nucleotidesAO356_14920 and AO356_14925 are separated by 127 nucleotidesAO356_14925 and AO356_14930 overlap by 4 nucleotides AO356_14910: AO356_14910 - thioredoxin, at 3,375,399 to 3,376,271 _14910 AO356_14915: AO356_14915 - methyltransferase, at 3,376,458 to 3,377,111 _14915 AO356_14920: AO356_14920 - hypothetical protein, at 3,377,108 to 3,377,572 _14920 AO356_14925: AO356_14925 - NrdR family transcriptional regulator, at 3,377,700 to 3,378,164 _14925 AO356_14930: AO356_14930 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,378,161 to 3,379,294 _14930 Position (kb) 3377 3378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3376.108 kb on + strand, within AO356_14910at 3376.108 kb on + strand, within AO356_14910at 3376.108 kb on + strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.109 kb on - strand, within AO356_14910at 3376.252 kb on + strandat 3376.252 kb on + strandat 3376.253 kb on - strandat 3376.253 kb on - strandat 3376.253 kb on - strandat 3376.253 kb on - strandat 3376.284 kb on - strandat 3376.305 kb on + strandat 3376.305 kb on + strandat 3376.305 kb on + strandat 3376.305 kb on + strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.306 kb on - strandat 3376.307 kb on + strandat 3376.308 kb on - strandat 3376.308 kb on - strandat 3376.308 kb on - strandat 3376.308 kb on - strandat 3376.474 kb on + strandat 3376.475 kb on - strandat 3376.652 kb on - strand, within AO356_14915at 3376.897 kb on + strand, within AO356_14915at 3376.939 kb on + strand, within AO356_14915at 3376.940 kb on - strand, within AO356_14915at 3377.095 kb on + strandat 3377.095 kb on + strandat 3377.096 kb on - strandat 3377.096 kb on - strandat 3377.096 kb on - strandat 3377.416 kb on - strand, within AO356_14920at 3377.611 kb on + strandat 3377.623 kb on + strandat 3377.623 kb on + strandat 3377.624 kb on - strandat 3377.624 kb on - strandat 3377.624 kb on - strandat 3377.624 kb on - strandat 3377.625 kb on + strandat 3377.626 kb on - strandat 3377.626 kb on - strandat 3377.630 kb on + strandat 3377.631 kb on - strandat 3377.631 kb on - strandat 3377.631 kb on - strandat 3377.638 kb on - strandat 3377.638 kb on - strandat 3378.069 kb on + strand, within AO356_14925at 3378.200 kb on + strandat 3378.200 kb on + strandat 3378.200 kb on + strandat 3378.200 kb on + strandat 3378.200 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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3,376,108 + AO356_14910 0.81 -0.8
3,376,108 + AO356_14910 0.81 +1.7
3,376,108 + AO356_14910 0.81 +0.8
3,376,109 - AO356_14910 0.81 -0.1
3,376,109 - AO356_14910 0.81 -0.2
3,376,109 - AO356_14910 0.81 -0.5
3,376,109 - AO356_14910 0.81 -2.7
3,376,109 - AO356_14910 0.81 +1.8
3,376,109 - AO356_14910 0.81 -3.1
3,376,109 - AO356_14910 0.81 -0.4
3,376,109 - AO356_14910 0.81 +0.3
3,376,109 - AO356_14910 0.81 -0.3
3,376,109 - AO356_14910 0.81 -1.3
3,376,109 - AO356_14910 0.81 -1.3
3,376,109 - AO356_14910 0.81 -1.1
3,376,252 + +0.3
3,376,252 + +0.7
3,376,253 - +1.0
3,376,253 - -1.4
3,376,253 - -0.7
3,376,253 - -1.5
3,376,284 - +2.3
3,376,305 + +0.4
3,376,305 + +0.6
3,376,305 + -0.8
3,376,305 + -1.2
3,376,306 - -0.4
3,376,306 - -0.5
3,376,306 - -0.7
3,376,306 - -1.1
3,376,306 - +0.9
3,376,306 - +0.6
3,376,306 - -1.9
3,376,306 - -1.5
3,376,306 - -1.7
3,376,306 - +0.6
3,376,306 - +1.8
3,376,306 - -0.4
3,376,306 - -1.0
3,376,306 - -0.7
3,376,307 + +0.1
3,376,308 - -1.5
3,376,308 - -2.8
3,376,308 - -0.1
3,376,308 - -2.9
3,376,474 + -2.7
3,376,475 - -1.1
3,376,652 - AO356_14915 0.30 -0.3
3,376,897 + AO356_14915 0.67 -0.5
3,376,939 + AO356_14915 0.74 -0.3
3,376,940 - AO356_14915 0.74 +1.7
3,377,095 + +0.3
3,377,095 + -2.0
3,377,096 - +3.4
3,377,096 - +0.4
3,377,096 - -0.8
3,377,416 - AO356_14920 0.66 +0.0
3,377,611 + -0.1
3,377,623 + +1.4
3,377,623 + -1.8
3,377,624 - -0.8
3,377,624 - +0.4
3,377,624 - +2.2
3,377,624 - +0.7
3,377,625 + -0.8
3,377,626 - +0.9
3,377,626 - +0.1
3,377,630 + +0.5
3,377,631 - -0.8
3,377,631 - -0.3
3,377,631 - +1.2
3,377,638 - +0.2
3,377,638 - +1.7
3,378,069 + AO356_14925 0.79 +0.0
3,378,200 + -2.1
3,378,200 + -0.3
3,378,200 + +0.2
3,378,200 + +0.1
3,378,200 + -0.3

Or see this region's nucleotide sequence