Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14910 and AO356_14915 are separated by 186 nucleotides AO356_14915 and AO356_14920 overlap by 4 nucleotides AO356_14920 and AO356_14925 are separated by 127 nucleotides AO356_14925 and AO356_14930 overlap by 4 nucleotides
AO356_14910: AO356_14910 - thioredoxin, at 3,375,399 to 3,376,271
_14910
AO356_14915: AO356_14915 - methyltransferase, at 3,376,458 to 3,377,111
_14915
AO356_14920: AO356_14920 - hypothetical protein, at 3,377,108 to 3,377,572
_14920
AO356_14925: AO356_14925 - NrdR family transcriptional regulator, at 3,377,700 to 3,378,164
_14925
AO356_14930: AO356_14930 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 3,378,161 to 3,379,294
_14930
Position (kb)
3377
3378 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3376.108 kb on + strand, within AO356_14910 at 3376.108 kb on + strand, within AO356_14910 at 3376.108 kb on + strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.109 kb on - strand, within AO356_14910 at 3376.252 kb on + strand at 3376.252 kb on + strand at 3376.253 kb on - strand at 3376.253 kb on - strand at 3376.253 kb on - strand at 3376.253 kb on - strand at 3376.284 kb on - strand at 3376.305 kb on + strand at 3376.305 kb on + strand at 3376.305 kb on + strand at 3376.305 kb on + strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.306 kb on - strand at 3376.307 kb on + strand at 3376.308 kb on - strand at 3376.308 kb on - strand at 3376.308 kb on - strand at 3376.308 kb on - strand at 3376.474 kb on + strand at 3376.475 kb on - strand at 3376.652 kb on - strand, within AO356_14915 at 3376.897 kb on + strand, within AO356_14915 at 3376.939 kb on + strand, within AO356_14915 at 3376.940 kb on - strand, within AO356_14915 at 3377.095 kb on + strand at 3377.095 kb on + strand at 3377.096 kb on - strand at 3377.096 kb on - strand at 3377.096 kb on - strand at 3377.416 kb on - strand, within AO356_14920 at 3377.611 kb on + strand at 3377.623 kb on + strand at 3377.623 kb on + strand at 3377.624 kb on - strand at 3377.624 kb on - strand at 3377.624 kb on - strand at 3377.624 kb on - strand at 3377.625 kb on + strand at 3377.626 kb on - strand at 3377.626 kb on - strand at 3377.630 kb on + strand at 3377.631 kb on - strand at 3377.631 kb on - strand at 3377.631 kb on - strand at 3377.638 kb on - strand at 3377.638 kb on - strand at 3378.069 kb on + strand, within AO356_14925 at 3378.200 kb on + strand at 3378.200 kb on + strand at 3378.200 kb on + strand at 3378.200 kb on + strand at 3378.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 3,376,108 + AO356_14910 0.81 -0.8 3,376,108 + AO356_14910 0.81 +1.7 3,376,108 + AO356_14910 0.81 +0.8 3,376,109 - AO356_14910 0.81 -0.1 3,376,109 - AO356_14910 0.81 -0.2 3,376,109 - AO356_14910 0.81 -0.5 3,376,109 - AO356_14910 0.81 -2.7 3,376,109 - AO356_14910 0.81 +1.8 3,376,109 - AO356_14910 0.81 -3.1 3,376,109 - AO356_14910 0.81 -0.4 3,376,109 - AO356_14910 0.81 +0.3 3,376,109 - AO356_14910 0.81 -0.3 3,376,109 - AO356_14910 0.81 -1.3 3,376,109 - AO356_14910 0.81 -1.3 3,376,109 - AO356_14910 0.81 -1.1 3,376,252 + +0.3 3,376,252 + +0.7 3,376,253 - +1.0 3,376,253 - -1.4 3,376,253 - -0.7 3,376,253 - -1.5 3,376,284 - +2.3 3,376,305 + +0.4 3,376,305 + +0.6 3,376,305 + -0.8 3,376,305 + -1.2 3,376,306 - -0.4 3,376,306 - -0.5 3,376,306 - -0.7 3,376,306 - -1.1 3,376,306 - +0.9 3,376,306 - +0.6 3,376,306 - -1.9 3,376,306 - -1.5 3,376,306 - -1.7 3,376,306 - +0.6 3,376,306 - +1.8 3,376,306 - -0.4 3,376,306 - -1.0 3,376,306 - -0.7 3,376,307 + +0.1 3,376,308 - -1.5 3,376,308 - -2.8 3,376,308 - -0.1 3,376,308 - -2.9 3,376,474 + -2.7 3,376,475 - -1.1 3,376,652 - AO356_14915 0.30 -0.3 3,376,897 + AO356_14915 0.67 -0.5 3,376,939 + AO356_14915 0.74 -0.3 3,376,940 - AO356_14915 0.74 +1.7 3,377,095 + +0.3 3,377,095 + -2.0 3,377,096 - +3.4 3,377,096 - +0.4 3,377,096 - -0.8 3,377,416 - AO356_14920 0.66 +0.0 3,377,611 + -0.1 3,377,623 + +1.4 3,377,623 + -1.8 3,377,624 - -0.8 3,377,624 - +0.4 3,377,624 - +2.2 3,377,624 - +0.7 3,377,625 + -0.8 3,377,626 - +0.9 3,377,626 - +0.1 3,377,630 + +0.5 3,377,631 - -0.8 3,377,631 - -0.3 3,377,631 - +1.2 3,377,638 - +0.2 3,377,638 - +1.7 3,378,069 + AO356_14925 0.79 +0.0 3,378,200 + -2.1 3,378,200 + -0.3 3,378,200 + +0.2 3,378,200 + +0.1 3,378,200 + -0.3
Or see this region's nucleotide sequence