Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09940

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09935 and AO356_09940 overlap by 11 nucleotides AO356_09935: AO356_09935 - hypothetical protein, at 2,244,955 to 2,245,950 _09935 AO356_09940: AO356_09940 - hypothetical protein, at 2,245,940 to 2,246,323 _09940 Position (kb) 2245 2246 2247Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2245.012 kb on + strandat 2245.013 kb on - strandat 2245.095 kb on + strand, within AO356_09935at 2245.164 kb on - strand, within AO356_09935at 2245.195 kb on - strand, within AO356_09935at 2245.318 kb on + strand, within AO356_09935at 2245.319 kb on - strand, within AO356_09935at 2245.345 kb on - strand, within AO356_09935at 2245.368 kb on + strand, within AO356_09935at 2245.369 kb on - strand, within AO356_09935at 2245.372 kb on - strand, within AO356_09935at 2245.413 kb on + strand, within AO356_09935at 2245.419 kb on - strand, within AO356_09935at 2245.485 kb on + strand, within AO356_09935at 2245.485 kb on + strand, within AO356_09935at 2245.486 kb on - strand, within AO356_09935at 2245.486 kb on - strand, within AO356_09935at 2245.486 kb on - strand, within AO356_09935at 2245.493 kb on - strand, within AO356_09935at 2245.493 kb on - strand, within AO356_09935at 2245.539 kb on + strand, within AO356_09935at 2245.539 kb on + strand, within AO356_09935at 2245.609 kb on + strand, within AO356_09935at 2245.610 kb on - strand, within AO356_09935at 2245.657 kb on - strand, within AO356_09935at 2245.676 kb on - strand, within AO356_09935at 2245.677 kb on + strand, within AO356_09935at 2245.679 kb on + strand, within AO356_09935at 2245.679 kb on + strand, within AO356_09935at 2245.679 kb on + strand, within AO356_09935at 2245.679 kb on + strand, within AO356_09935at 2245.679 kb on + strand, within AO356_09935at 2245.679 kb on + strand, within AO356_09935at 2245.718 kb on + strand, within AO356_09935at 2245.719 kb on - strand, within AO356_09935at 2245.725 kb on + strand, within AO356_09935at 2245.737 kb on + strand, within AO356_09935at 2245.737 kb on + strand, within AO356_09935at 2245.812 kb on + strand, within AO356_09935at 2245.817 kb on - strand, within AO356_09935at 2245.882 kb on - strandat 2245.882 kb on - strandat 2245.915 kb on + strandat 2245.916 kb on - strandat 2246.099 kb on + strand, within AO356_09940at 2246.099 kb on + strand, within AO356_09940at 2246.455 kb on + strandat 2246.757 kb on + strandat 2247.050 kb on + strandat 2247.080 kb on + strandat 2247.081 kb on - strandat 2247.081 kb on - strandat 2247.082 kb on + strandat 2247.082 kb on + strandat 2247.083 kb on - strandat 2247.083 kb on - strandat 2247.083 kb on - strandat 2247.083 kb on - strandat 2247.120 kb on + strandat 2247.121 kb on - strandat 2247.121 kb on - strandat 2247.153 kb on + strandat 2247.164 kb on - strandat 2247.164 kb on - strandat 2247.164 kb on - strandat 2247.164 kb on - strandat 2247.175 kb on + strandat 2247.175 kb on + strandat 2247.175 kb on + strandat 2247.176 kb on - strandat 2247.176 kb on - strandat 2247.187 kb on + strandat 2247.187 kb on + strandat 2247.188 kb on - strandat 2247.244 kb on + strandat 2247.274 kb on - strandat 2247.279 kb on - strandat 2247.287 kb on + strandat 2247.287 kb on + strandat 2247.287 kb on + strandat 2247.288 kb on - strandat 2247.288 kb on - strandat 2247.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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2,245,012 + -1.8
2,245,013 - -0.3
2,245,095 + AO356_09935 0.14 +0.4
2,245,164 - AO356_09935 0.21 +1.2
2,245,195 - AO356_09935 0.24 +0.2
2,245,318 + AO356_09935 0.36 -0.6
2,245,319 - AO356_09935 0.37 +0.4
2,245,345 - AO356_09935 0.39 -1.0
2,245,368 + AO356_09935 0.41 +0.7
2,245,369 - AO356_09935 0.42 -0.9
2,245,372 - AO356_09935 0.42 -0.7
2,245,413 + AO356_09935 0.46 -0.6
2,245,419 - AO356_09935 0.47 +0.2
2,245,485 + AO356_09935 0.53 +0.7
2,245,485 + AO356_09935 0.53 +0.5
2,245,486 - AO356_09935 0.53 +0.3
2,245,486 - AO356_09935 0.53 -1.8
2,245,486 - AO356_09935 0.53 +2.3
2,245,493 - AO356_09935 0.54 +0.1
2,245,493 - AO356_09935 0.54 +0.4
2,245,539 + AO356_09935 0.59 -1.8
2,245,539 + AO356_09935 0.59 -0.2
2,245,609 + AO356_09935 0.66 +0.6
2,245,610 - AO356_09935 0.66 -0.2
2,245,657 - AO356_09935 0.70 -0.3
2,245,676 - AO356_09935 0.72 +1.1
2,245,677 + AO356_09935 0.72 -1.4
2,245,679 + AO356_09935 0.73 -0.1
2,245,679 + AO356_09935 0.73 +0.3
2,245,679 + AO356_09935 0.73 -2.6
2,245,679 + AO356_09935 0.73 -0.6
2,245,679 + AO356_09935 0.73 +0.3
2,245,679 + AO356_09935 0.73 +1.7
2,245,718 + AO356_09935 0.77 -1.3
2,245,719 - AO356_09935 0.77 +0.3
2,245,725 + AO356_09935 0.77 -1.0
2,245,737 + AO356_09935 0.79 -0.3
2,245,737 + AO356_09935 0.79 -1.2
2,245,812 + AO356_09935 0.86 -0.1
2,245,817 - AO356_09935 0.87 +0.2
2,245,882 - +0.5
2,245,882 - -0.9
2,245,915 + +0.6
2,245,916 - +0.4
2,246,099 + AO356_09940 0.41 -1.4
2,246,099 + AO356_09940 0.41 -2.1
2,246,455 + +0.5
2,246,757 + -0.1
2,247,050 + -0.6
2,247,080 + -0.1
2,247,081 - +0.1
2,247,081 - -1.2
2,247,082 + +0.9
2,247,082 + +0.0
2,247,083 - +0.6
2,247,083 - -0.8
2,247,083 - -0.2
2,247,083 - +0.6
2,247,120 + +1.1
2,247,121 - -1.3
2,247,121 - +1.0
2,247,153 + -0.6
2,247,164 - +0.3
2,247,164 - -0.1
2,247,164 - +0.6
2,247,164 - +0.4
2,247,175 + -1.7
2,247,175 + +0.6
2,247,175 + -1.0
2,247,176 - -1.3
2,247,176 - -1.3
2,247,187 + -1.0
2,247,187 + -0.1
2,247,188 - -0.5
2,247,244 + -2.9
2,247,274 - +0.9
2,247,279 - +0.2
2,247,287 + -1.6
2,247,287 + +0.7
2,247,287 + +0.0
2,247,288 - -0.7
2,247,288 - +0.1
2,247,288 - -1.6

Or see this region's nucleotide sequence