Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09055 and AO356_09060 overlap by 4 nucleotides AO356_09060 and AO356_09065 are separated by 165 nucleotides AO356_09065 and AO356_09070 are separated by 266 nucleotides
AO356_09055: AO356_09055 - transcriptional regulator, at 2,054,523 to 2,054,924
_09055
AO356_09060: AO356_09060 - hypothetical protein, at 2,054,921 to 2,055,217
_09060
AO356_09065: AO356_09065 - hypothetical protein, at 2,055,383 to 2,055,661
_09065
AO356_09070: AO356_09070 - LysR family transcriptional regulator, at 2,055,928 to 2,056,836
_09070
Position (kb)
2055
2056 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2054.442 kb on + strand at 2054.442 kb on + strand at 2054.443 kb on - strand at 2054.472 kb on - strand at 2054.518 kb on - strand at 2054.598 kb on - strand, within AO356_09055 at 2054.607 kb on + strand, within AO356_09055 at 2054.608 kb on - strand, within AO356_09055 at 2054.608 kb on - strand, within AO356_09055 at 2054.608 kb on - strand, within AO356_09055 at 2054.760 kb on - strand, within AO356_09055 at 2054.842 kb on + strand, within AO356_09055 at 2054.842 kb on + strand, within AO356_09055 at 2054.842 kb on + strand, within AO356_09055 at 2054.843 kb on - strand, within AO356_09055 at 2054.843 kb on - strand, within AO356_09055 at 2054.843 kb on - strand, within AO356_09055 at 2054.955 kb on + strand, within AO356_09060 at 2054.955 kb on + strand, within AO356_09060 at 2054.983 kb on + strand, within AO356_09060 at 2054.983 kb on + strand, within AO356_09060 at 2054.983 kb on + strand, within AO356_09060 at 2054.984 kb on - strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.985 kb on + strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2054.986 kb on - strand, within AO356_09060 at 2055.087 kb on - strand, within AO356_09060 at 2055.252 kb on + strand at 2055.252 kb on + strand at 2055.294 kb on + strand at 2055.306 kb on + strand at 2055.307 kb on - strand at 2055.328 kb on + strand at 2055.328 kb on + strand at 2055.329 kb on - strand at 2055.329 kb on - strand at 2055.329 kb on - strand at 2055.345 kb on - strand at 2055.371 kb on + strand at 2055.371 kb on + strand at 2055.372 kb on - strand at 2055.372 kb on - strand at 2055.372 kb on - strand at 2055.372 kb on - strand at 2055.372 kb on - strand at 2055.372 kb on - strand at 2055.372 kb on - strand at 2055.549 kb on + strand, within AO356_09065 at 2055.550 kb on - strand, within AO356_09065 at 2055.550 kb on - strand, within AO356_09065 at 2055.685 kb on + strand at 2055.685 kb on + strand at 2055.685 kb on + strand at 2055.685 kb on + strand at 2055.685 kb on + strand at 2055.685 kb on + strand at 2055.686 kb on - strand at 2055.686 kb on - strand at 2055.686 kb on - strand at 2055.686 kb on - strand at 2055.771 kb on + strand at 2055.772 kb on - strand at 2055.772 kb on - strand at 2055.841 kb on + strand at 2055.909 kb on + strand at 2055.909 kb on + strand at 2055.910 kb on - strand at 2055.910 kb on - strand at 2055.929 kb on + strand at 2055.978 kb on + strand at 2055.978 kb on + strand at 2055.978 kb on + strand at 2055.978 kb on + strand at 2055.979 kb on - strand at 2055.979 kb on - strand at 2056.082 kb on - strand, within AO356_09070 at 2056.094 kb on - strand, within AO356_09070 at 2056.232 kb on + strand, within AO356_09070 at 2056.233 kb on - strand, within AO356_09070 at 2056.233 kb on - strand, within AO356_09070 at 2056.233 kb on - strand, within AO356_09070 at 2056.316 kb on + strand, within AO356_09070 at 2056.316 kb on + strand, within AO356_09070 at 2056.316 kb on + strand, within AO356_09070 at 2056.316 kb on + strand, within AO356_09070 at 2056.347 kb on + strand, within AO356_09070 at 2056.347 kb on + strand, within AO356_09070 at 2056.347 kb on + strand, within AO356_09070 at 2056.348 kb on - strand, within AO356_09070 at 2056.481 kb on + strand, within AO356_09070 at 2056.481 kb on + strand, within AO356_09070 at 2056.481 kb on + strand, within AO356_09070 at 2056.481 kb on + strand, within AO356_09070 at 2056.493 kb on + strand, within AO356_09070 at 2056.494 kb on - strand, within AO356_09070 at 2056.494 kb on - strand, within AO356_09070 at 2056.521 kb on + strand, within AO356_09070 at 2056.521 kb on + strand, within AO356_09070 at 2056.521 kb on + strand, within AO356_09070 at 2056.521 kb on + strand, within AO356_09070 at 2056.521 kb on + strand, within AO356_09070 at 2056.522 kb on - strand, within AO356_09070 at 2056.522 kb on - strand, within AO356_09070 at 2056.522 kb on - strand, within AO356_09070 at 2056.637 kb on + strand, within AO356_09070 at 2056.638 kb on - strand, within AO356_09070 at 2056.638 kb on - strand, within AO356_09070 at 2056.638 kb on - strand, within AO356_09070 at 2056.641 kb on - strand, within AO356_09070 at 2056.641 kb on - strand, within AO356_09070 at 2056.641 kb on - strand, within AO356_09070
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 2,054,442 + -1.2 2,054,442 + +2.4 2,054,443 - +1.0 2,054,472 - +0.1 2,054,518 - -1.0 2,054,598 - AO356_09055 0.19 +1.7 2,054,607 + AO356_09055 0.21 -0.3 2,054,608 - AO356_09055 0.21 -1.2 2,054,608 - AO356_09055 0.21 -1.1 2,054,608 - AO356_09055 0.21 -0.1 2,054,760 - AO356_09055 0.59 -0.3 2,054,842 + AO356_09055 0.79 +0.4 2,054,842 + AO356_09055 0.79 +0.8 2,054,842 + AO356_09055 0.79 +3.9 2,054,843 - AO356_09055 0.80 +1.3 2,054,843 - AO356_09055 0.80 -0.2 2,054,843 - AO356_09055 0.80 -0.2 2,054,955 + AO356_09060 0.11 +0.0 2,054,955 + AO356_09060 0.11 -1.0 2,054,983 + AO356_09060 0.21 +1.0 2,054,983 + AO356_09060 0.21 +1.7 2,054,983 + AO356_09060 0.21 +0.8 2,054,984 - AO356_09060 0.21 -2.0 2,054,985 + AO356_09060 0.22 -1.0 2,054,985 + AO356_09060 0.22 +0.6 2,054,985 + AO356_09060 0.22 +0.1 2,054,985 + AO356_09060 0.22 -0.4 2,054,985 + AO356_09060 0.22 -0.1 2,054,985 + AO356_09060 0.22 +0.4 2,054,985 + AO356_09060 0.22 +0.5 2,054,985 + AO356_09060 0.22 +0.1 2,054,985 + AO356_09060 0.22 +1.2 2,054,985 + AO356_09060 0.22 +1.3 2,054,985 + AO356_09060 0.22 +0.4 2,054,985 + AO356_09060 0.22 +0.7 2,054,986 - AO356_09060 0.22 -0.2 2,054,986 - AO356_09060 0.22 -0.1 2,054,986 - AO356_09060 0.22 -0.4 2,054,986 - AO356_09060 0.22 -1.9 2,054,986 - AO356_09060 0.22 -1.6 2,054,986 - AO356_09060 0.22 +0.5 2,054,986 - AO356_09060 0.22 -1.0 2,054,986 - AO356_09060 0.22 -0.4 2,055,087 - AO356_09060 0.56 -0.5 2,055,252 + -0.9 2,055,252 + -1.2 2,055,294 + -1.6 2,055,306 + -2.6 2,055,307 - +0.6 2,055,328 + -0.1 2,055,328 + -0.3 2,055,329 - -0.3 2,055,329 - -0.6 2,055,329 - -1.2 2,055,345 - -0.9 2,055,371 + -0.2 2,055,371 + -0.9 2,055,372 - -0.6 2,055,372 - -0.9 2,055,372 - +1.8 2,055,372 - +0.7 2,055,372 - -2.3 2,055,372 - -1.7 2,055,372 - +0.4 2,055,549 + AO356_09065 0.59 -1.7 2,055,550 - AO356_09065 0.60 -0.1 2,055,550 - AO356_09065 0.60 -2.8 2,055,685 + -1.6 2,055,685 + -1.9 2,055,685 + -0.4 2,055,685 + +0.9 2,055,685 + +0.0 2,055,685 + -1.0 2,055,686 - +0.9 2,055,686 - -1.3 2,055,686 - -0.6 2,055,686 - +0.5 2,055,771 + +0.2 2,055,772 - +0.2 2,055,772 - +2.1 2,055,841 + -1.4 2,055,909 + +1.0 2,055,909 + +0.8 2,055,910 - +1.1 2,055,910 - -0.5 2,055,929 + +1.6 2,055,978 + -1.5 2,055,978 + -1.1 2,055,978 + +0.4 2,055,978 + +0.8 2,055,979 - +1.1 2,055,979 - +1.6 2,056,082 - AO356_09070 0.17 -0.9 2,056,094 - AO356_09070 0.18 +2.2 2,056,232 + AO356_09070 0.33 -0.7 2,056,233 - AO356_09070 0.34 +0.4 2,056,233 - AO356_09070 0.34 -0.9 2,056,233 - AO356_09070 0.34 +1.6 2,056,316 + AO356_09070 0.43 -1.2 2,056,316 + AO356_09070 0.43 +1.1 2,056,316 + AO356_09070 0.43 -0.1 2,056,316 + AO356_09070 0.43 +0.1 2,056,347 + AO356_09070 0.46 -0.7 2,056,347 + AO356_09070 0.46 +1.8 2,056,347 + AO356_09070 0.46 -0.3 2,056,348 - AO356_09070 0.46 -1.6 2,056,481 + AO356_09070 0.61 -0.5 2,056,481 + AO356_09070 0.61 +1.3 2,056,481 + AO356_09070 0.61 +1.0 2,056,481 + AO356_09070 0.61 -1.0 2,056,493 + AO356_09070 0.62 -0.1 2,056,494 - AO356_09070 0.62 +0.5 2,056,494 - AO356_09070 0.62 -0.3 2,056,521 + AO356_09070 0.65 +1.5 2,056,521 + AO356_09070 0.65 +0.0 2,056,521 + AO356_09070 0.65 -3.4 2,056,521 + AO356_09070 0.65 -0.4 2,056,521 + AO356_09070 0.65 -1.3 2,056,522 - AO356_09070 0.65 -0.7 2,056,522 - AO356_09070 0.65 +0.1 2,056,522 - AO356_09070 0.65 +0.5 2,056,637 + AO356_09070 0.78 -0.8 2,056,638 - AO356_09070 0.78 +0.9 2,056,638 - AO356_09070 0.78 -0.4 2,056,638 - AO356_09070 0.78 +0.3 2,056,641 - AO356_09070 0.78 +1.1 2,056,641 - AO356_09070 0.78 -0.6 2,056,641 - AO356_09070 0.78 -0.8
Or see this region's nucleotide sequence