Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09065

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09055 and AO356_09060 overlap by 4 nucleotidesAO356_09060 and AO356_09065 are separated by 165 nucleotidesAO356_09065 and AO356_09070 are separated by 266 nucleotides AO356_09055: AO356_09055 - transcriptional regulator, at 2,054,523 to 2,054,924 _09055 AO356_09060: AO356_09060 - hypothetical protein, at 2,054,921 to 2,055,217 _09060 AO356_09065: AO356_09065 - hypothetical protein, at 2,055,383 to 2,055,661 _09065 AO356_09070: AO356_09070 - LysR family transcriptional regulator, at 2,055,928 to 2,056,836 _09070 Position (kb) 2055 2056Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2054.442 kb on + strandat 2054.442 kb on + strandat 2054.443 kb on - strandat 2054.472 kb on - strandat 2054.518 kb on - strandat 2054.598 kb on - strand, within AO356_09055at 2054.607 kb on + strand, within AO356_09055at 2054.608 kb on - strand, within AO356_09055at 2054.608 kb on - strand, within AO356_09055at 2054.608 kb on - strand, within AO356_09055at 2054.760 kb on - strand, within AO356_09055at 2054.842 kb on + strand, within AO356_09055at 2054.842 kb on + strand, within AO356_09055at 2054.842 kb on + strand, within AO356_09055at 2054.843 kb on - strand, within AO356_09055at 2054.843 kb on - strand, within AO356_09055at 2054.843 kb on - strand, within AO356_09055at 2054.955 kb on + strand, within AO356_09060at 2054.955 kb on + strand, within AO356_09060at 2054.983 kb on + strand, within AO356_09060at 2054.983 kb on + strand, within AO356_09060at 2054.983 kb on + strand, within AO356_09060at 2054.984 kb on - strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.985 kb on + strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2054.986 kb on - strand, within AO356_09060at 2055.087 kb on - strand, within AO356_09060at 2055.252 kb on + strandat 2055.252 kb on + strandat 2055.294 kb on + strandat 2055.306 kb on + strandat 2055.307 kb on - strandat 2055.328 kb on + strandat 2055.328 kb on + strandat 2055.329 kb on - strandat 2055.329 kb on - strandat 2055.329 kb on - strandat 2055.345 kb on - strandat 2055.371 kb on + strandat 2055.371 kb on + strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.372 kb on - strandat 2055.549 kb on + strand, within AO356_09065at 2055.550 kb on - strand, within AO356_09065at 2055.550 kb on - strand, within AO356_09065at 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.685 kb on + strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.686 kb on - strandat 2055.771 kb on + strandat 2055.772 kb on - strandat 2055.772 kb on - strandat 2055.841 kb on + strandat 2055.909 kb on + strandat 2055.909 kb on + strandat 2055.910 kb on - strandat 2055.910 kb on - strandat 2055.929 kb on + strandat 2055.978 kb on + strandat 2055.978 kb on + strandat 2055.978 kb on + strandat 2055.978 kb on + strandat 2055.979 kb on - strandat 2055.979 kb on - strandat 2056.082 kb on - strand, within AO356_09070at 2056.094 kb on - strand, within AO356_09070at 2056.232 kb on + strand, within AO356_09070at 2056.233 kb on - strand, within AO356_09070at 2056.233 kb on - strand, within AO356_09070at 2056.233 kb on - strand, within AO356_09070at 2056.316 kb on + strand, within AO356_09070at 2056.316 kb on + strand, within AO356_09070at 2056.316 kb on + strand, within AO356_09070at 2056.316 kb on + strand, within AO356_09070at 2056.347 kb on + strand, within AO356_09070at 2056.347 kb on + strand, within AO356_09070at 2056.347 kb on + strand, within AO356_09070at 2056.348 kb on - strand, within AO356_09070at 2056.481 kb on + strand, within AO356_09070at 2056.481 kb on + strand, within AO356_09070at 2056.481 kb on + strand, within AO356_09070at 2056.481 kb on + strand, within AO356_09070at 2056.493 kb on + strand, within AO356_09070at 2056.494 kb on - strand, within AO356_09070at 2056.494 kb on - strand, within AO356_09070at 2056.521 kb on + strand, within AO356_09070at 2056.521 kb on + strand, within AO356_09070at 2056.521 kb on + strand, within AO356_09070at 2056.521 kb on + strand, within AO356_09070at 2056.521 kb on + strand, within AO356_09070at 2056.522 kb on - strand, within AO356_09070at 2056.522 kb on - strand, within AO356_09070at 2056.522 kb on - strand, within AO356_09070at 2056.637 kb on + strand, within AO356_09070at 2056.638 kb on - strand, within AO356_09070at 2056.638 kb on - strand, within AO356_09070at 2056.638 kb on - strand, within AO356_09070at 2056.641 kb on - strand, within AO356_09070at 2056.641 kb on - strand, within AO356_09070at 2056.641 kb on - strand, within AO356_09070

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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2,054,442 + -1.2
2,054,442 + +2.4
2,054,443 - +1.0
2,054,472 - +0.1
2,054,518 - -1.0
2,054,598 - AO356_09055 0.19 +1.7
2,054,607 + AO356_09055 0.21 -0.3
2,054,608 - AO356_09055 0.21 -1.2
2,054,608 - AO356_09055 0.21 -1.1
2,054,608 - AO356_09055 0.21 -0.1
2,054,760 - AO356_09055 0.59 -0.3
2,054,842 + AO356_09055 0.79 +0.4
2,054,842 + AO356_09055 0.79 +0.8
2,054,842 + AO356_09055 0.79 +3.9
2,054,843 - AO356_09055 0.80 +1.3
2,054,843 - AO356_09055 0.80 -0.2
2,054,843 - AO356_09055 0.80 -0.2
2,054,955 + AO356_09060 0.11 +0.0
2,054,955 + AO356_09060 0.11 -1.0
2,054,983 + AO356_09060 0.21 +1.0
2,054,983 + AO356_09060 0.21 +1.7
2,054,983 + AO356_09060 0.21 +0.8
2,054,984 - AO356_09060 0.21 -2.0
2,054,985 + AO356_09060 0.22 -1.0
2,054,985 + AO356_09060 0.22 +0.6
2,054,985 + AO356_09060 0.22 +0.1
2,054,985 + AO356_09060 0.22 -0.4
2,054,985 + AO356_09060 0.22 -0.1
2,054,985 + AO356_09060 0.22 +0.4
2,054,985 + AO356_09060 0.22 +0.5
2,054,985 + AO356_09060 0.22 +0.1
2,054,985 + AO356_09060 0.22 +1.2
2,054,985 + AO356_09060 0.22 +1.3
2,054,985 + AO356_09060 0.22 +0.4
2,054,985 + AO356_09060 0.22 +0.7
2,054,986 - AO356_09060 0.22 -0.2
2,054,986 - AO356_09060 0.22 -0.1
2,054,986 - AO356_09060 0.22 -0.4
2,054,986 - AO356_09060 0.22 -1.9
2,054,986 - AO356_09060 0.22 -1.6
2,054,986 - AO356_09060 0.22 +0.5
2,054,986 - AO356_09060 0.22 -1.0
2,054,986 - AO356_09060 0.22 -0.4
2,055,087 - AO356_09060 0.56 -0.5
2,055,252 + -0.9
2,055,252 + -1.2
2,055,294 + -1.6
2,055,306 + -2.6
2,055,307 - +0.6
2,055,328 + -0.1
2,055,328 + -0.3
2,055,329 - -0.3
2,055,329 - -0.6
2,055,329 - -1.2
2,055,345 - -0.9
2,055,371 + -0.2
2,055,371 + -0.9
2,055,372 - -0.6
2,055,372 - -0.9
2,055,372 - +1.8
2,055,372 - +0.7
2,055,372 - -2.3
2,055,372 - -1.7
2,055,372 - +0.4
2,055,549 + AO356_09065 0.59 -1.7
2,055,550 - AO356_09065 0.60 -0.1
2,055,550 - AO356_09065 0.60 -2.8
2,055,685 + -1.6
2,055,685 + -1.9
2,055,685 + -0.4
2,055,685 + +0.9
2,055,685 + +0.0
2,055,685 + -1.0
2,055,686 - +0.9
2,055,686 - -1.3
2,055,686 - -0.6
2,055,686 - +0.5
2,055,771 + +0.2
2,055,772 - +0.2
2,055,772 - +2.1
2,055,841 + -1.4
2,055,909 + +1.0
2,055,909 + +0.8
2,055,910 - +1.1
2,055,910 - -0.5
2,055,929 + +1.6
2,055,978 + -1.5
2,055,978 + -1.1
2,055,978 + +0.4
2,055,978 + +0.8
2,055,979 - +1.1
2,055,979 - +1.6
2,056,082 - AO356_09070 0.17 -0.9
2,056,094 - AO356_09070 0.18 +2.2
2,056,232 + AO356_09070 0.33 -0.7
2,056,233 - AO356_09070 0.34 +0.4
2,056,233 - AO356_09070 0.34 -0.9
2,056,233 - AO356_09070 0.34 +1.6
2,056,316 + AO356_09070 0.43 -1.2
2,056,316 + AO356_09070 0.43 +1.1
2,056,316 + AO356_09070 0.43 -0.1
2,056,316 + AO356_09070 0.43 +0.1
2,056,347 + AO356_09070 0.46 -0.7
2,056,347 + AO356_09070 0.46 +1.8
2,056,347 + AO356_09070 0.46 -0.3
2,056,348 - AO356_09070 0.46 -1.6
2,056,481 + AO356_09070 0.61 -0.5
2,056,481 + AO356_09070 0.61 +1.3
2,056,481 + AO356_09070 0.61 +1.0
2,056,481 + AO356_09070 0.61 -1.0
2,056,493 + AO356_09070 0.62 -0.1
2,056,494 - AO356_09070 0.62 +0.5
2,056,494 - AO356_09070 0.62 -0.3
2,056,521 + AO356_09070 0.65 +1.5
2,056,521 + AO356_09070 0.65 +0.0
2,056,521 + AO356_09070 0.65 -3.4
2,056,521 + AO356_09070 0.65 -0.4
2,056,521 + AO356_09070 0.65 -1.3
2,056,522 - AO356_09070 0.65 -0.7
2,056,522 - AO356_09070 0.65 +0.1
2,056,522 - AO356_09070 0.65 +0.5
2,056,637 + AO356_09070 0.78 -0.8
2,056,638 - AO356_09070 0.78 +0.9
2,056,638 - AO356_09070 0.78 -0.4
2,056,638 - AO356_09070 0.78 +0.3
2,056,641 - AO356_09070 0.78 +1.1
2,056,641 - AO356_09070 0.78 -0.6
2,056,641 - AO356_09070 0.78 -0.8

Or see this region's nucleotide sequence