Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08745

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08740 and AO356_08745 are separated by 544 nucleotidesAO356_08745 and AO356_08750 are separated by 179 nucleotides AO356_08740: AO356_08740 - histidine kinase, at 1,967,959 to 1,969,476 _08740 AO356_08745: AO356_08745 - hypothetical protein, at 1,970,021 to 1,970,725 _08745 AO356_08750: AO356_08750 - DNA topoisomerase IV, at 1,970,905 to 1,973,169 _08750 Position (kb) 1970 1971Strain fitness (log2 ratio) -2 -1 0 1 2at 1969.493 kb on + strandat 1969.493 kb on + strandat 1969.493 kb on + strandat 1969.493 kb on + strandat 1969.493 kb on + strandat 1969.494 kb on - strandat 1969.494 kb on - strandat 1969.933 kb on + strandat 1969.933 kb on + strandat 1970.006 kb on + strandat 1970.007 kb on - strandat 1970.007 kb on - strandat 1970.007 kb on - strandat 1970.007 kb on - strandat 1970.008 kb on + strandat 1970.008 kb on + strandat 1970.008 kb on + strandat 1970.008 kb on + strandat 1970.008 kb on + strandat 1970.008 kb on + strandat 1970.008 kb on + strandat 1970.009 kb on - strandat 1970.009 kb on - strandat 1970.009 kb on - strandat 1970.009 kb on - strandat 1970.047 kb on + strandat 1970.366 kb on + strand, within AO356_08745at 1970.366 kb on + strand, within AO356_08745at 1970.366 kb on + strand, within AO356_08745at 1970.366 kb on + strand, within AO356_08745at 1970.366 kb on + strand, within AO356_08745at 1970.366 kb on + strand, within AO356_08745at 1970.367 kb on - strand, within AO356_08745at 1970.367 kb on - strand, within AO356_08745at 1970.367 kb on - strand, within AO356_08745at 1970.557 kb on - strand, within AO356_08745at 1970.557 kb on - strand, within AO356_08745at 1970.585 kb on + strand, within AO356_08745at 1970.586 kb on - strand, within AO356_08745at 1970.586 kb on - strand, within AO356_08745at 1970.640 kb on + strand, within AO356_08745at 1970.640 kb on + strand, within AO356_08745at 1970.641 kb on - strand, within AO356_08745at 1970.641 kb on - strand, within AO356_08745at 1970.641 kb on - strand, within AO356_08745at 1970.704 kb on + strandat 1970.821 kb on + strandat 1970.821 kb on + strandat 1970.821 kb on + strandat 1970.821 kb on + strandat 1970.822 kb on - strandat 1970.822 kb on - strandat 1970.822 kb on - strandat 1970.822 kb on - strandat 1970.822 kb on - strandat 1970.834 kb on + strandat 1970.834 kb on + strandat 1970.834 kb on + strandat 1970.835 kb on - strandat 1970.835 kb on - strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.897 kb on + strandat 1970.898 kb on - strandat 1970.898 kb on - strandat 1970.898 kb on - strandat 1970.898 kb on - strandat 1970.898 kb on - strandat 1970.900 kb on + strandat 1970.900 kb on + strandat 1970.900 kb on + strandat 1970.901 kb on - strandat 1970.901 kb on - strandat 1970.901 kb on - strandat 1970.906 kb on + strandat 1970.907 kb on - strandat 1970.907 kb on - strandat 1970.907 kb on - strandat 1970.907 kb on - strandat 1970.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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1,969,493 + +0.2
1,969,493 + -2.3
1,969,493 + +2.1
1,969,493 + +0.3
1,969,493 + -1.4
1,969,494 - -1.8
1,969,494 - -2.1
1,969,933 + -0.7
1,969,933 + +1.1
1,970,006 + +1.5
1,970,007 - +0.2
1,970,007 - -0.2
1,970,007 - +0.2
1,970,007 - -1.4
1,970,008 + -0.2
1,970,008 + +1.2
1,970,008 + -1.0
1,970,008 + -1.6
1,970,008 + +1.3
1,970,008 + -0.3
1,970,008 + +0.7
1,970,009 - -0.5
1,970,009 - +0.7
1,970,009 - -1.0
1,970,009 - -2.2
1,970,047 + -1.2
1,970,366 + AO356_08745 0.49 -0.5
1,970,366 + AO356_08745 0.49 -1.3
1,970,366 + AO356_08745 0.49 -0.1
1,970,366 + AO356_08745 0.49 +1.4
1,970,366 + AO356_08745 0.49 +0.7
1,970,366 + AO356_08745 0.49 +0.0
1,970,367 - AO356_08745 0.49 -1.6
1,970,367 - AO356_08745 0.49 -0.8
1,970,367 - AO356_08745 0.49 -2.4
1,970,557 - AO356_08745 0.76 +1.2
1,970,557 - AO356_08745 0.76 +0.8
1,970,585 + AO356_08745 0.80 -1.3
1,970,586 - AO356_08745 0.80 -0.4
1,970,586 - AO356_08745 0.80 +1.3
1,970,640 + AO356_08745 0.88 -1.2
1,970,640 + AO356_08745 0.88 +1.2
1,970,641 - AO356_08745 0.88 -0.0
1,970,641 - AO356_08745 0.88 -0.3
1,970,641 - AO356_08745 0.88 +0.5
1,970,704 + +0.4
1,970,821 + -0.3
1,970,821 + -1.6
1,970,821 + +0.2
1,970,821 + -2.2
1,970,822 - +0.4
1,970,822 - -0.8
1,970,822 - +0.5
1,970,822 - +0.0
1,970,822 - -2.1
1,970,834 + +0.9
1,970,834 + +0.4
1,970,834 + +1.6
1,970,835 - +0.5
1,970,835 - +1.4
1,970,897 + +1.1
1,970,897 + +0.7
1,970,897 + -0.9
1,970,897 + +0.4
1,970,897 + +0.7
1,970,897 + -0.5
1,970,897 + +1.6
1,970,897 + -0.8
1,970,897 + +0.0
1,970,898 - -1.6
1,970,898 - +0.4
1,970,898 - +0.9
1,970,898 - -0.2
1,970,898 - +0.7
1,970,900 + +0.4
1,970,900 + +0.2
1,970,900 + +0.6
1,970,901 - -0.0
1,970,901 - -0.2
1,970,901 - -1.5
1,970,906 + +0.1
1,970,907 - -0.7
1,970,907 - -0.9
1,970,907 - -0.8
1,970,907 - +0.0
1,970,907 - -1.1

Or see this region's nucleotide sequence