Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08115

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08110 and AO356_08115 are separated by 228 nucleotidesAO356_08115 and AO356_08120 are separated by 20 nucleotidesAO356_08120 and AO356_08125 are separated by 25 nucleotides AO356_08110: AO356_08110 - acyl dehydratase, at 1,816,170 to 1,817,024 _08110 AO356_08115: AO356_08115 - hypothetical protein, at 1,817,253 to 1,817,810 _08115 AO356_08120: AO356_08120 - hypothetical protein, at 1,817,831 to 1,818,448 _08120 AO356_08125: AO356_08125 - SAM-dependent methyltransferase, at 1,818,474 to 1,819,223 _08125 Position (kb) 1817 1818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1816.368 kb on + strand, within AO356_08110at 1816.728 kb on + strand, within AO356_08110at 1816.728 kb on + strand, within AO356_08110at 1816.728 kb on + strand, within AO356_08110at 1816.749 kb on + strand, within AO356_08110at 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.994 kb on + strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1816.995 kb on - strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.163 kb on + strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.164 kb on - strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.167 kb on + strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.168 kb on - strandat 1817.266 kb on + strandat 1817.266 kb on + strandat 1817.266 kb on + strandat 1817.419 kb on + strand, within AO356_08115at 1817.419 kb on + strand, within AO356_08115at 1817.420 kb on - strand, within AO356_08115at 1817.420 kb on - strand, within AO356_08115at 1817.443 kb on + strand, within AO356_08115at 1817.443 kb on + strand, within AO356_08115at 1817.443 kb on + strand, within AO356_08115at 1817.536 kb on + strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.537 kb on - strand, within AO356_08115at 1817.753 kb on + strand, within AO356_08115at 1817.753 kb on + strand, within AO356_08115at 1817.754 kb on - strand, within AO356_08115at 1817.791 kb on - strandat 1817.828 kb on + strandat 1817.829 kb on - strandat 1817.829 kb on - strandat 1817.997 kb on + strand, within AO356_08120at 1817.997 kb on + strand, within AO356_08120at 1817.997 kb on + strand, within AO356_08120at 1817.997 kb on + strand, within AO356_08120at 1817.998 kb on - strand, within AO356_08120at 1817.998 kb on - strand, within AO356_08120at 1817.998 kb on - strand, within AO356_08120at 1818.025 kb on - strand, within AO356_08120at 1818.061 kb on + strand, within AO356_08120at 1818.063 kb on + strand, within AO356_08120at 1818.063 kb on + strand, within AO356_08120at 1818.063 kb on + strand, within AO356_08120at 1818.064 kb on - strand, within AO356_08120at 1818.064 kb on - strand, within AO356_08120at 1818.073 kb on - strand, within AO356_08120at 1818.075 kb on + strand, within AO356_08120at 1818.087 kb on + strand, within AO356_08120at 1818.087 kb on + strand, within AO356_08120at 1818.087 kb on + strand, within AO356_08120at 1818.087 kb on + strand, within AO356_08120at 1818.088 kb on - strand, within AO356_08120at 1818.088 kb on - strand, within AO356_08120at 1818.088 kb on - strand, within AO356_08120at 1818.088 kb on - strand, within AO356_08120at 1818.291 kb on + strand, within AO356_08120at 1818.312 kb on + strand, within AO356_08120at 1818.381 kb on + strand, within AO356_08120at 1818.381 kb on + strand, within AO356_08120at 1818.381 kb on + strand, within AO356_08120at 1818.382 kb on - strand, within AO356_08120at 1818.502 kb on + strandat 1818.503 kb on - strandat 1818.503 kb on - strandat 1818.601 kb on + strand, within AO356_08125at 1818.601 kb on + strand, within AO356_08125at 1818.601 kb on + strand, within AO356_08125at 1818.601 kb on + strand, within AO356_08125at 1818.601 kb on + strand, within AO356_08125at 1818.601 kb on + strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.602 kb on - strand, within AO356_08125at 1818.790 kb on + strand, within AO356_08125at 1818.791 kb on - strand, within AO356_08125

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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1,816,368 + AO356_08110 0.23 +1.2
1,816,728 + AO356_08110 0.65 +0.5
1,816,728 + AO356_08110 0.65 +0.2
1,816,728 + AO356_08110 0.65 +0.5
1,816,749 + AO356_08110 0.68 +0.2
1,816,994 + +0.1
1,816,994 + +0.1
1,816,994 + -1.5
1,816,994 + -0.5
1,816,994 + -2.3
1,816,994 + -1.7
1,816,994 + -0.3
1,816,995 - -0.7
1,816,995 - -3.3
1,816,995 - +1.1
1,816,995 - -0.0
1,816,995 - -1.1
1,816,995 - -1.1
1,816,995 - -2.0
1,816,995 - -0.6
1,817,163 + +0.5
1,817,163 + -2.3
1,817,163 + +0.7
1,817,163 + -0.1
1,817,163 + -2.2
1,817,163 + +1.3
1,817,164 - +0.8
1,817,164 - +0.0
1,817,164 - -0.1
1,817,164 - -1.6
1,817,164 - -0.9
1,817,164 - -2.3
1,817,164 - -1.3
1,817,164 - -1.5
1,817,167 + +0.4
1,817,167 + -1.7
1,817,167 + -1.2
1,817,167 + -1.2
1,817,167 + +0.1
1,817,167 + +0.4
1,817,167 + +1.4
1,817,167 + -0.2
1,817,168 - -1.7
1,817,168 - +2.2
1,817,168 - -0.1
1,817,168 - +1.0
1,817,168 - +0.3
1,817,168 - -1.3
1,817,168 - +1.0
1,817,168 - +0.6
1,817,168 - +2.3
1,817,168 - -1.4
1,817,266 + -1.3
1,817,266 + -1.3
1,817,266 + +0.2
1,817,419 + AO356_08115 0.30 -0.3
1,817,419 + AO356_08115 0.30 -1.9
1,817,420 - AO356_08115 0.30 +1.4
1,817,420 - AO356_08115 0.30 +0.4
1,817,443 + AO356_08115 0.34 +0.4
1,817,443 + AO356_08115 0.34 +0.5
1,817,443 + AO356_08115 0.34 -0.7
1,817,536 + AO356_08115 0.51 -0.2
1,817,537 - AO356_08115 0.51 -2.4
1,817,537 - AO356_08115 0.51 -1.1
1,817,537 - AO356_08115 0.51 +0.1
1,817,537 - AO356_08115 0.51 +0.4
1,817,537 - AO356_08115 0.51 -1.3
1,817,753 + AO356_08115 0.90 +0.9
1,817,753 + AO356_08115 0.90 -0.5
1,817,754 - AO356_08115 0.90 +0.7
1,817,791 - -1.0
1,817,828 + -0.4
1,817,829 - +0.3
1,817,829 - +0.4
1,817,997 + AO356_08120 0.27 -0.6
1,817,997 + AO356_08120 0.27 +1.9
1,817,997 + AO356_08120 0.27 -1.5
1,817,997 + AO356_08120 0.27 -0.5
1,817,998 - AO356_08120 0.27 +1.5
1,817,998 - AO356_08120 0.27 -0.3
1,817,998 - AO356_08120 0.27 -1.8
1,818,025 - AO356_08120 0.31 +0.7
1,818,061 + AO356_08120 0.37 -1.2
1,818,063 + AO356_08120 0.38 +0.0
1,818,063 + AO356_08120 0.38 -0.9
1,818,063 + AO356_08120 0.38 -0.3
1,818,064 - AO356_08120 0.38 +0.8
1,818,064 - AO356_08120 0.38 +1.2
1,818,073 - AO356_08120 0.39 +1.4
1,818,075 + AO356_08120 0.39 -0.7
1,818,087 + AO356_08120 0.41 -0.9
1,818,087 + AO356_08120 0.41 -2.8
1,818,087 + AO356_08120 0.41 +0.8
1,818,087 + AO356_08120 0.41 -0.4
1,818,088 - AO356_08120 0.42 +0.4
1,818,088 - AO356_08120 0.42 -0.4
1,818,088 - AO356_08120 0.42 +0.7
1,818,088 - AO356_08120 0.42 -1.0
1,818,291 + AO356_08120 0.74 -0.8
1,818,312 + AO356_08120 0.78 -0.2
1,818,381 + AO356_08120 0.89 +0.7
1,818,381 + AO356_08120 0.89 +0.4
1,818,381 + AO356_08120 0.89 +2.6
1,818,382 - AO356_08120 0.89 +0.4
1,818,502 + -0.4
1,818,503 - -0.9
1,818,503 - -1.8
1,818,601 + AO356_08125 0.17 +1.5
1,818,601 + AO356_08125 0.17 +0.8
1,818,601 + AO356_08125 0.17 -1.3
1,818,601 + AO356_08125 0.17 +0.5
1,818,601 + AO356_08125 0.17 -2.6
1,818,601 + AO356_08125 0.17 -0.9
1,818,602 - AO356_08125 0.17 -0.4
1,818,602 - AO356_08125 0.17 -1.9
1,818,602 - AO356_08125 0.17 -1.0
1,818,602 - AO356_08125 0.17 -0.7
1,818,602 - AO356_08125 0.17 +0.2
1,818,602 - AO356_08125 0.17 -0.7
1,818,602 - AO356_08125 0.17 -1.6
1,818,602 - AO356_08125 0.17 -0.5
1,818,602 - AO356_08125 0.17 +1.3
1,818,790 + AO356_08125 0.42 -1.1
1,818,791 - AO356_08125 0.42 +0.3

Or see this region's nucleotide sequence