Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08110 and AO356_08115 are separated by 228 nucleotides AO356_08115 and AO356_08120 are separated by 20 nucleotides AO356_08120 and AO356_08125 are separated by 25 nucleotides
AO356_08110: AO356_08110 - acyl dehydratase, at 1,816,170 to 1,817,024
_08110
AO356_08115: AO356_08115 - hypothetical protein, at 1,817,253 to 1,817,810
_08115
AO356_08120: AO356_08120 - hypothetical protein, at 1,817,831 to 1,818,448
_08120
AO356_08125: AO356_08125 - SAM-dependent methyltransferase, at 1,818,474 to 1,819,223
_08125
Position (kb)
1817
1818 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1816.368 kb on + strand, within AO356_08110 at 1816.728 kb on + strand, within AO356_08110 at 1816.728 kb on + strand, within AO356_08110 at 1816.728 kb on + strand, within AO356_08110 at 1816.749 kb on + strand, within AO356_08110 at 1816.994 kb on + strand at 1816.994 kb on + strand at 1816.994 kb on + strand at 1816.994 kb on + strand at 1816.994 kb on + strand at 1816.994 kb on + strand at 1816.994 kb on + strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1816.995 kb on - strand at 1817.163 kb on + strand at 1817.163 kb on + strand at 1817.163 kb on + strand at 1817.163 kb on + strand at 1817.163 kb on + strand at 1817.163 kb on + strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.164 kb on - strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.167 kb on + strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.168 kb on - strand at 1817.266 kb on + strand at 1817.266 kb on + strand at 1817.266 kb on + strand at 1817.419 kb on + strand, within AO356_08115 at 1817.419 kb on + strand, within AO356_08115 at 1817.420 kb on - strand, within AO356_08115 at 1817.420 kb on - strand, within AO356_08115 at 1817.443 kb on + strand, within AO356_08115 at 1817.443 kb on + strand, within AO356_08115 at 1817.443 kb on + strand, within AO356_08115 at 1817.536 kb on + strand, within AO356_08115 at 1817.537 kb on - strand, within AO356_08115 at 1817.537 kb on - strand, within AO356_08115 at 1817.537 kb on - strand, within AO356_08115 at 1817.537 kb on - strand, within AO356_08115 at 1817.537 kb on - strand, within AO356_08115 at 1817.753 kb on + strand, within AO356_08115 at 1817.753 kb on + strand, within AO356_08115 at 1817.754 kb on - strand, within AO356_08115 at 1817.791 kb on - strand at 1817.828 kb on + strand at 1817.829 kb on - strand at 1817.829 kb on - strand at 1817.997 kb on + strand, within AO356_08120 at 1817.997 kb on + strand, within AO356_08120 at 1817.997 kb on + strand, within AO356_08120 at 1817.997 kb on + strand, within AO356_08120 at 1817.998 kb on - strand, within AO356_08120 at 1817.998 kb on - strand, within AO356_08120 at 1817.998 kb on - strand, within AO356_08120 at 1818.025 kb on - strand, within AO356_08120 at 1818.061 kb on + strand, within AO356_08120 at 1818.063 kb on + strand, within AO356_08120 at 1818.063 kb on + strand, within AO356_08120 at 1818.063 kb on + strand, within AO356_08120 at 1818.064 kb on - strand, within AO356_08120 at 1818.064 kb on - strand, within AO356_08120 at 1818.073 kb on - strand, within AO356_08120 at 1818.075 kb on + strand, within AO356_08120 at 1818.087 kb on + strand, within AO356_08120 at 1818.087 kb on + strand, within AO356_08120 at 1818.087 kb on + strand, within AO356_08120 at 1818.087 kb on + strand, within AO356_08120 at 1818.088 kb on - strand, within AO356_08120 at 1818.088 kb on - strand, within AO356_08120 at 1818.088 kb on - strand, within AO356_08120 at 1818.088 kb on - strand, within AO356_08120 at 1818.291 kb on + strand, within AO356_08120 at 1818.312 kb on + strand, within AO356_08120 at 1818.381 kb on + strand, within AO356_08120 at 1818.381 kb on + strand, within AO356_08120 at 1818.381 kb on + strand, within AO356_08120 at 1818.382 kb on - strand, within AO356_08120 at 1818.502 kb on + strand at 1818.503 kb on - strand at 1818.503 kb on - strand at 1818.601 kb on + strand, within AO356_08125 at 1818.601 kb on + strand, within AO356_08125 at 1818.601 kb on + strand, within AO356_08125 at 1818.601 kb on + strand, within AO356_08125 at 1818.601 kb on + strand, within AO356_08125 at 1818.601 kb on + strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.602 kb on - strand, within AO356_08125 at 1818.790 kb on + strand, within AO356_08125 at 1818.791 kb on - strand, within AO356_08125
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 1,816,368 + AO356_08110 0.23 +1.2 1,816,728 + AO356_08110 0.65 +0.5 1,816,728 + AO356_08110 0.65 +0.2 1,816,728 + AO356_08110 0.65 +0.5 1,816,749 + AO356_08110 0.68 +0.2 1,816,994 + +0.1 1,816,994 + +0.1 1,816,994 + -1.5 1,816,994 + -0.5 1,816,994 + -2.3 1,816,994 + -1.7 1,816,994 + -0.3 1,816,995 - -0.7 1,816,995 - -3.3 1,816,995 - +1.1 1,816,995 - -0.0 1,816,995 - -1.1 1,816,995 - -1.1 1,816,995 - -2.0 1,816,995 - -0.6 1,817,163 + +0.5 1,817,163 + -2.3 1,817,163 + +0.7 1,817,163 + -0.1 1,817,163 + -2.2 1,817,163 + +1.3 1,817,164 - +0.8 1,817,164 - +0.0 1,817,164 - -0.1 1,817,164 - -1.6 1,817,164 - -0.9 1,817,164 - -2.3 1,817,164 - -1.3 1,817,164 - -1.5 1,817,167 + +0.4 1,817,167 + -1.7 1,817,167 + -1.2 1,817,167 + -1.2 1,817,167 + +0.1 1,817,167 + +0.4 1,817,167 + +1.4 1,817,167 + -0.2 1,817,168 - -1.7 1,817,168 - +2.2 1,817,168 - -0.1 1,817,168 - +1.0 1,817,168 - +0.3 1,817,168 - -1.3 1,817,168 - +1.0 1,817,168 - +0.6 1,817,168 - +2.3 1,817,168 - -1.4 1,817,266 + -1.3 1,817,266 + -1.3 1,817,266 + +0.2 1,817,419 + AO356_08115 0.30 -0.3 1,817,419 + AO356_08115 0.30 -1.9 1,817,420 - AO356_08115 0.30 +1.4 1,817,420 - AO356_08115 0.30 +0.4 1,817,443 + AO356_08115 0.34 +0.4 1,817,443 + AO356_08115 0.34 +0.5 1,817,443 + AO356_08115 0.34 -0.7 1,817,536 + AO356_08115 0.51 -0.2 1,817,537 - AO356_08115 0.51 -2.4 1,817,537 - AO356_08115 0.51 -1.1 1,817,537 - AO356_08115 0.51 +0.1 1,817,537 - AO356_08115 0.51 +0.4 1,817,537 - AO356_08115 0.51 -1.3 1,817,753 + AO356_08115 0.90 +0.9 1,817,753 + AO356_08115 0.90 -0.5 1,817,754 - AO356_08115 0.90 +0.7 1,817,791 - -1.0 1,817,828 + -0.4 1,817,829 - +0.3 1,817,829 - +0.4 1,817,997 + AO356_08120 0.27 -0.6 1,817,997 + AO356_08120 0.27 +1.9 1,817,997 + AO356_08120 0.27 -1.5 1,817,997 + AO356_08120 0.27 -0.5 1,817,998 - AO356_08120 0.27 +1.5 1,817,998 - AO356_08120 0.27 -0.3 1,817,998 - AO356_08120 0.27 -1.8 1,818,025 - AO356_08120 0.31 +0.7 1,818,061 + AO356_08120 0.37 -1.2 1,818,063 + AO356_08120 0.38 +0.0 1,818,063 + AO356_08120 0.38 -0.9 1,818,063 + AO356_08120 0.38 -0.3 1,818,064 - AO356_08120 0.38 +0.8 1,818,064 - AO356_08120 0.38 +1.2 1,818,073 - AO356_08120 0.39 +1.4 1,818,075 + AO356_08120 0.39 -0.7 1,818,087 + AO356_08120 0.41 -0.9 1,818,087 + AO356_08120 0.41 -2.8 1,818,087 + AO356_08120 0.41 +0.8 1,818,087 + AO356_08120 0.41 -0.4 1,818,088 - AO356_08120 0.42 +0.4 1,818,088 - AO356_08120 0.42 -0.4 1,818,088 - AO356_08120 0.42 +0.7 1,818,088 - AO356_08120 0.42 -1.0 1,818,291 + AO356_08120 0.74 -0.8 1,818,312 + AO356_08120 0.78 -0.2 1,818,381 + AO356_08120 0.89 +0.7 1,818,381 + AO356_08120 0.89 +0.4 1,818,381 + AO356_08120 0.89 +2.6 1,818,382 - AO356_08120 0.89 +0.4 1,818,502 + -0.4 1,818,503 - -0.9 1,818,503 - -1.8 1,818,601 + AO356_08125 0.17 +1.5 1,818,601 + AO356_08125 0.17 +0.8 1,818,601 + AO356_08125 0.17 -1.3 1,818,601 + AO356_08125 0.17 +0.5 1,818,601 + AO356_08125 0.17 -2.6 1,818,601 + AO356_08125 0.17 -0.9 1,818,602 - AO356_08125 0.17 -0.4 1,818,602 - AO356_08125 0.17 -1.9 1,818,602 - AO356_08125 0.17 -1.0 1,818,602 - AO356_08125 0.17 -0.7 1,818,602 - AO356_08125 0.17 +0.2 1,818,602 - AO356_08125 0.17 -0.7 1,818,602 - AO356_08125 0.17 -1.6 1,818,602 - AO356_08125 0.17 -0.5 1,818,602 - AO356_08125 0.17 +1.3 1,818,790 + AO356_08125 0.42 -1.1 1,818,791 - AO356_08125 0.42 +0.3
Or see this region's nucleotide sequence