Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08085 and AO356_08090 overlap by 14 nucleotides AO356_08090 and AO356_08095 are separated by 101 nucleotides AO356_08095 and AO356_08100 overlap by 4 nucleotides
AO356_08085: AO356_08085 - bile acid:sodium symporter, at 1,811,017 to 1,812,045
_08085
AO356_08090: AO356_08090 - acetyl-CoA acetyltransferase, at 1,812,032 to 1,813,309
_08090
AO356_08095: AO356_08095 - transposase, at 1,813,411 to 1,814,247
_08095
AO356_08100: AO356_08100 - transposase, at 1,814,244 to 1,814,546
_08100
Position (kb)
1812
1813
1814 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1811.095 kb on + strand at 1811.095 kb on + strand at 1811.095 kb on + strand at 1811.096 kb on - strand at 1811.270 kb on + strand, within AO356_08085 at 1811.270 kb on + strand, within AO356_08085 at 1811.270 kb on + strand, within AO356_08085 at 1811.347 kb on + strand, within AO356_08085 at 1811.347 kb on + strand, within AO356_08085 at 1811.347 kb on + strand, within AO356_08085 at 1811.347 kb on + strand, within AO356_08085 at 1811.347 kb on + strand, within AO356_08085 at 1811.347 kb on + strand, within AO356_08085 at 1811.348 kb on - strand, within AO356_08085 at 1811.348 kb on - strand, within AO356_08085 at 1811.348 kb on - strand, within AO356_08085 at 1811.348 kb on - strand, within AO356_08085 at 1811.409 kb on + strand, within AO356_08085 at 1811.615 kb on - strand, within AO356_08085 at 1811.624 kb on - strand, within AO356_08085 at 1811.624 kb on - strand, within AO356_08085 at 1811.938 kb on + strand, within AO356_08085 at 1811.938 kb on + strand, within AO356_08085 at 1811.938 kb on + strand, within AO356_08085 at 1811.938 kb on + strand, within AO356_08085 at 1811.938 kb on + strand, within AO356_08085 at 1811.939 kb on - strand, within AO356_08085 at 1811.939 kb on - strand, within AO356_08085 at 1811.939 kb on - strand, within AO356_08085 at 1811.939 kb on - strand, within AO356_08085 at 1811.939 kb on - strand, within AO356_08085 at 1811.939 kb on - strand, within AO356_08085 at 1811.984 kb on - strand at 1811.984 kb on - strand at 1811.984 kb on - strand at 1812.255 kb on + strand, within AO356_08090 at 1812.256 kb on - strand, within AO356_08090 at 1812.256 kb on - strand, within AO356_08090 at 1812.256 kb on - strand, within AO356_08090 at 1812.324 kb on + strand, within AO356_08090 at 1812.324 kb on + strand, within AO356_08090 at 1812.325 kb on - strand, within AO356_08090 at 1812.378 kb on + strand, within AO356_08090 at 1812.379 kb on - strand, within AO356_08090 at 1812.379 kb on - strand, within AO356_08090 at 1812.450 kb on + strand, within AO356_08090 at 1812.451 kb on - strand, within AO356_08090 at 1812.451 kb on - strand, within AO356_08090 at 1812.811 kb on + strand, within AO356_08090 at 1812.811 kb on + strand, within AO356_08090 at 1812.857 kb on + strand, within AO356_08090 at 1812.858 kb on - strand, within AO356_08090 at 1812.858 kb on - strand, within AO356_08090 at 1812.858 kb on - strand, within AO356_08090 at 1813.050 kb on - strand, within AO356_08090 at 1813.050 kb on - strand, within AO356_08090 at 1813.050 kb on - strand, within AO356_08090 at 1813.050 kb on - strand, within AO356_08090 at 1813.050 kb on - strand, within AO356_08090 at 1813.050 kb on - strand, within AO356_08090 at 1813.056 kb on + strand, within AO356_08090 at 1813.056 kb on + strand, within AO356_08090 at 1813.056 kb on + strand, within AO356_08090 at 1813.056 kb on + strand, within AO356_08090 at 1813.057 kb on - strand, within AO356_08090 at 1813.057 kb on - strand, within AO356_08090 at 1813.057 kb on - strand, within AO356_08090 at 1813.057 kb on - strand, within AO356_08090 at 1813.057 kb on - strand, within AO356_08090 at 1813.114 kb on + strand, within AO356_08090 at 1813.114 kb on + strand, within AO356_08090 at 1813.179 kb on + strand, within AO356_08090 at 1813.179 kb on + strand, within AO356_08090 at 1813.180 kb on - strand, within AO356_08090 at 1813.180 kb on - strand, within AO356_08090 at 1813.180 kb on - strand, within AO356_08090 at 1813.240 kb on - strand at 1813.240 kb on - strand at 1813.240 kb on - strand at 1813.240 kb on - strand at 1813.298 kb on + strand at 1813.298 kb on + strand at 1813.298 kb on + strand at 1813.298 kb on + strand at 1813.298 kb on + strand at 1813.298 kb on + strand at 1813.298 kb on + strand at 1813.299 kb on - strand at 1813.324 kb on + strand at 1813.324 kb on + strand at 1813.324 kb on + strand at 1813.324 kb on + strand at 1813.324 kb on + strand at 1813.325 kb on - strand at 1813.325 kb on - strand at 1813.325 kb on - strand at 1813.338 kb on + strand at 1813.338 kb on + strand at 1813.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 1,811,095 + +0.9 1,811,095 + +0.9 1,811,095 + +1.3 1,811,096 - +0.6 1,811,270 + AO356_08085 0.25 -0.4 1,811,270 + AO356_08085 0.25 +0.1 1,811,270 + AO356_08085 0.25 -0.7 1,811,347 + AO356_08085 0.32 +0.6 1,811,347 + AO356_08085 0.32 +0.2 1,811,347 + AO356_08085 0.32 +0.5 1,811,347 + AO356_08085 0.32 +0.6 1,811,347 + AO356_08085 0.32 -1.1 1,811,347 + AO356_08085 0.32 -1.9 1,811,348 - AO356_08085 0.32 -1.1 1,811,348 - AO356_08085 0.32 +0.0 1,811,348 - AO356_08085 0.32 -0.5 1,811,348 - AO356_08085 0.32 +1.1 1,811,409 + AO356_08085 0.38 +1.4 1,811,615 - AO356_08085 0.58 -0.6 1,811,624 - AO356_08085 0.59 -2.5 1,811,624 - AO356_08085 0.59 -0.8 1,811,938 + AO356_08085 0.90 -1.1 1,811,938 + AO356_08085 0.90 +2.0 1,811,938 + AO356_08085 0.90 -1.4 1,811,938 + AO356_08085 0.90 +0.1 1,811,938 + AO356_08085 0.90 -1.9 1,811,939 - AO356_08085 0.90 +0.6 1,811,939 - AO356_08085 0.90 -0.2 1,811,939 - AO356_08085 0.90 +1.5 1,811,939 - AO356_08085 0.90 +0.4 1,811,939 - AO356_08085 0.90 +0.7 1,811,939 - AO356_08085 0.90 -0.3 1,811,984 - +0.3 1,811,984 - +0.0 1,811,984 - -0.9 1,812,255 + AO356_08090 0.17 +1.5 1,812,256 - AO356_08090 0.18 -1.5 1,812,256 - AO356_08090 0.18 +0.6 1,812,256 - AO356_08090 0.18 -0.6 1,812,324 + AO356_08090 0.23 -0.6 1,812,324 + AO356_08090 0.23 -2.7 1,812,325 - AO356_08090 0.23 -1.7 1,812,378 + AO356_08090 0.27 +1.1 1,812,379 - AO356_08090 0.27 +1.3 1,812,379 - AO356_08090 0.27 -0.5 1,812,450 + AO356_08090 0.33 -0.2 1,812,451 - AO356_08090 0.33 -0.6 1,812,451 - AO356_08090 0.33 -1.0 1,812,811 + AO356_08090 0.61 +0.2 1,812,811 + AO356_08090 0.61 +0.9 1,812,857 + AO356_08090 0.65 +0.7 1,812,858 - AO356_08090 0.65 -2.0 1,812,858 - AO356_08090 0.65 +0.1 1,812,858 - AO356_08090 0.65 +1.1 1,813,050 - AO356_08090 0.80 -1.2 1,813,050 - AO356_08090 0.80 +0.3 1,813,050 - AO356_08090 0.80 -1.9 1,813,050 - AO356_08090 0.80 -2.5 1,813,050 - AO356_08090 0.80 +0.3 1,813,050 - AO356_08090 0.80 +0.9 1,813,056 + AO356_08090 0.80 +0.1 1,813,056 + AO356_08090 0.80 +3.6 1,813,056 + AO356_08090 0.80 -1.4 1,813,056 + AO356_08090 0.80 +0.7 1,813,057 - AO356_08090 0.80 -0.4 1,813,057 - AO356_08090 0.80 -1.3 1,813,057 - AO356_08090 0.80 +0.5 1,813,057 - AO356_08090 0.80 -0.8 1,813,057 - AO356_08090 0.80 +0.3 1,813,114 + AO356_08090 0.85 +1.0 1,813,114 + AO356_08090 0.85 +1.1 1,813,179 + AO356_08090 0.90 +0.5 1,813,179 + AO356_08090 0.90 +0.2 1,813,180 - AO356_08090 0.90 +0.2 1,813,180 - AO356_08090 0.90 -0.3 1,813,180 - AO356_08090 0.90 -1.4 1,813,240 - +2.4 1,813,240 - +0.3 1,813,240 - +0.4 1,813,240 - +1.4 1,813,298 + -0.4 1,813,298 + -0.7 1,813,298 + -0.2 1,813,298 + +0.8 1,813,298 + -0.4 1,813,298 + -1.4 1,813,298 + +0.0 1,813,299 - -0.6 1,813,324 + +0.2 1,813,324 + +0.3 1,813,324 + -0.5 1,813,324 + +0.2 1,813,324 + +0.6 1,813,325 - +0.7 1,813,325 - +0.4 1,813,325 - -0.6 1,813,338 + +1.1 1,813,338 + +0.5 1,813,405 - -3.1
Or see this region's nucleotide sequence