Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06605 and AO356_06610 are separated by 28 nucleotides AO356_06610 and AO356_06615 are separated by 88 nucleotides AO356_06615 and AO356_06620 are separated by 13 nucleotides AO356_06620 and AO356_06625 are separated by 3 nucleotides
AO356_06605: AO356_06605 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 1,462,955 to 1,464,103
_06605
AO356_06610: AO356_06610 - nucleoside diphosphate kinase, at 1,464,132 to 1,464,557
_06610
AO356_06615: AO356_06615 - FeS assembly protein IscX, at 1,464,646 to 1,464,846
_06615
AO356_06620: AO356_06620 - 2Fe-2S ferredoxin, at 1,464,860 to 1,465,201
_06620
AO356_06625: AO356_06625 - chaperone protein HscA, at 1,465,205 to 1,467,067
_06625
Position (kb)
1464
1465 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1463.711 kb on - strand, within AO356_06605 at 1464.145 kb on - strand at 1464.145 kb on - strand at 1464.145 kb on - strand at 1464.606 kb on - strand at 1464.624 kb on - strand at 1464.715 kb on - strand, within AO356_06615 at 1464.839 kb on + strand at 1464.839 kb on + strand at 1464.840 kb on - strand at 1464.840 kb on - strand at 1464.840 kb on - strand at 1464.840 kb on - strand at 1464.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 1,463,711 - AO356_06605 0.66 +2.1 1,464,145 - -1.2 1,464,145 - -0.6 1,464,145 - -1.2 1,464,606 - -0.1 1,464,624 - -1.5 1,464,715 - AO356_06615 0.34 -2.2 1,464,839 + +3.0 1,464,839 + -1.2 1,464,840 - -1.6 1,464,840 - +0.5 1,464,840 - -1.4 1,464,840 - +0.3 1,464,840 - +0.7
Or see this region's nucleotide sequence