Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06615

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06605 and AO356_06610 are separated by 28 nucleotidesAO356_06610 and AO356_06615 are separated by 88 nucleotidesAO356_06615 and AO356_06620 are separated by 13 nucleotidesAO356_06620 and AO356_06625 are separated by 3 nucleotides AO356_06605: AO356_06605 - 23S rRNA (adenine(2503)-C2)-methyltransferase, at 1,462,955 to 1,464,103 _06605 AO356_06610: AO356_06610 - nucleoside diphosphate kinase, at 1,464,132 to 1,464,557 _06610 AO356_06615: AO356_06615 - FeS assembly protein IscX, at 1,464,646 to 1,464,846 _06615 AO356_06620: AO356_06620 - 2Fe-2S ferredoxin, at 1,464,860 to 1,465,201 _06620 AO356_06625: AO356_06625 - chaperone protein HscA, at 1,465,205 to 1,467,067 _06625 Position (kb) 1464 1465Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1463.711 kb on - strand, within AO356_06605at 1464.145 kb on - strandat 1464.145 kb on - strandat 1464.145 kb on - strandat 1464.606 kb on - strandat 1464.624 kb on - strandat 1464.715 kb on - strand, within AO356_06615at 1464.839 kb on + strandat 1464.839 kb on + strandat 1464.840 kb on - strandat 1464.840 kb on - strandat 1464.840 kb on - strandat 1464.840 kb on - strandat 1464.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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1,463,711 - AO356_06605 0.66 +2.1
1,464,145 - -1.2
1,464,145 - -0.6
1,464,145 - -1.2
1,464,606 - -0.1
1,464,624 - -1.5
1,464,715 - AO356_06615 0.34 -2.2
1,464,839 + +3.0
1,464,839 + -1.2
1,464,840 - -1.6
1,464,840 - +0.5
1,464,840 - -1.4
1,464,840 - +0.3
1,464,840 - +0.7

Or see this region's nucleotide sequence