Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03425 and AO356_03430 are separated by 176 nucleotides AO356_03430 and AO356_03435 are separated by 26 nucleotides AO356_03435 and AO356_03440 are separated by 144 nucleotides AO356_03440 and AO356_03445 are separated by 231 nucleotides
AO356_03425: AO356_03425 - chain-length determining protein, at 762,784 to 763,839
_03425
AO356_03430: AO356_03430 - hypothetical protein, at 764,016 to 764,240
_03430
AO356_03435: AO356_03435 - integration host factor subunit beta, at 764,267 to 764,563
_03435
AO356_03440: AO356_03440 - hypothetical protein, at 764,708 to 764,986
_03440
AO356_03445: AO356_03445 - 30S ribosomal protein S1, at 765,218 to 766,912
_03445
Position (kb) 764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 763.710 kb on - strand, within AO356_03425 at 763.894 kb on + strand at 763.895 kb on - strand at 763.934 kb on - strand at 763.934 kb on - strand at 763.986 kb on + strand at 763.987 kb on - strand at 763.998 kb on - strand at 764.010 kb on + strand at 764.011 kb on - strand at 764.017 kb on + strand at 764.018 kb on - strand at 764.030 kb on + strand at 764.067 kb on + strand, within AO356_03430 at 764.068 kb on - strand, within AO356_03430 at 764.068 kb on - strand, within AO356_03430 at 764.072 kb on + strand, within AO356_03430 at 764.072 kb on + strand, within AO356_03430 at 764.072 kb on + strand, within AO356_03430 at 764.073 kb on - strand, within AO356_03430 at 764.073 kb on - strand, within AO356_03430 at 764.170 kb on - strand, within AO356_03430 at 764.199 kb on + strand, within AO356_03430 at 764.199 kb on + strand, within AO356_03430 at 764.256 kb on + strand at 764.256 kb on + strand at 764.306 kb on - strand, within AO356_03435 at 764.306 kb on - strand, within AO356_03435 at 764.306 kb on - strand, within AO356_03435 at 764.385 kb on - strand, within AO356_03435 at 764.400 kb on + strand, within AO356_03435 at 764.613 kb on + strand at 764.614 kb on - strand at 764.645 kb on + strand at 764.645 kb on + strand at 764.645 kb on + strand at 764.645 kb on + strand at 764.646 kb on - strand at 764.646 kb on - strand at 764.731 kb on + strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.732 kb on - strand at 764.742 kb on + strand, within AO356_03440 at 764.770 kb on - strand, within AO356_03440 at 764.814 kb on + strand, within AO356_03440 at 764.814 kb on + strand, within AO356_03440 at 764.815 kb on - strand, within AO356_03440 at 764.848 kb on + strand, within AO356_03440 at 764.848 kb on + strand, within AO356_03440 at 764.849 kb on - strand, within AO356_03440 at 764.849 kb on - strand, within AO356_03440 at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.980 kb on + strand at 764.981 kb on - strand at 764.981 kb on - strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.022 kb on + strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.023 kb on - strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.024 kb on + strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.025 kb on - strand at 765.049 kb on - strand at 765.067 kb on + strand at 765.067 kb on + strand at 765.067 kb on + strand at 765.068 kb on - strand at 765.068 kb on - strand at 765.155 kb on - strand at 765.155 kb on - strand at 765.161 kb on + strand at 765.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 763,710 - AO356_03425 0.88 +8.9 763,894 + +7.8 763,895 - -0.0 763,934 - +2.6 763,934 - +1.4 763,986 + +7.9 763,987 - +1.1 763,998 - -1.1 764,010 + +8.2 764,011 - -2.3 764,017 + +7.4 764,018 - +1.7 764,030 + +8.7 764,067 + AO356_03430 0.23 +7.9 764,068 - AO356_03430 0.23 -0.3 764,068 - AO356_03430 0.23 -0.6 764,072 + AO356_03430 0.25 +9.6 764,072 + AO356_03430 0.25 +7.0 764,072 + AO356_03430 0.25 +8.1 764,073 - AO356_03430 0.25 -0.8 764,073 - AO356_03430 0.25 -0.6 764,170 - AO356_03430 0.68 +1.0 764,199 + AO356_03430 0.81 +7.9 764,199 + AO356_03430 0.81 +5.3 764,256 + +6.4 764,256 + +5.9 764,306 - AO356_03435 0.13 +2.1 764,306 - AO356_03435 0.13 +0.1 764,306 - AO356_03435 0.13 -0.1 764,385 - AO356_03435 0.40 +0.9 764,400 + AO356_03435 0.45 +3.4 764,613 + +3.3 764,614 - -0.1 764,645 + -2.0 764,645 + +0.3 764,645 + +0.0 764,645 + -0.2 764,646 - +0.1 764,646 - -0.8 764,731 + +0.3 764,732 - +0.2 764,732 - -1.7 764,732 - -0.6 764,732 - +1.1 764,732 - -2.8 764,742 + AO356_03440 0.12 +0.9 764,770 - AO356_03440 0.22 -0.1 764,814 + AO356_03440 0.38 +0.4 764,814 + AO356_03440 0.38 +0.4 764,815 - AO356_03440 0.38 +2.0 764,848 + AO356_03440 0.50 +1.1 764,848 + AO356_03440 0.50 +0.9 764,849 - AO356_03440 0.51 +1.2 764,849 - AO356_03440 0.51 +1.0 764,980 + -0.6 764,980 + -0.0 764,980 + +1.2 764,980 + +1.1 764,980 + +1.8 764,980 + +0.6 764,981 - -0.4 764,981 - +0.2 765,022 + +0.4 765,022 + -0.1 765,022 + -2.4 765,022 + +0.4 765,023 - -1.1 765,023 - -1.1 765,023 - -1.3 765,023 - -0.1 765,023 - -2.0 765,023 - -0.6 765,023 - +0.9 765,023 - +0.0 765,023 - -0.2 765,023 - -0.6 765,023 - -0.8 765,024 + -1.5 765,024 + +1.0 765,024 + +0.1 765,024 + +0.5 765,024 + -0.6 765,024 + -0.9 765,024 + -0.9 765,025 - +0.4 765,025 - +0.7 765,025 - -0.6 765,025 - +0.4 765,025 - -0.7 765,025 - +1.4 765,025 - -2.7 765,049 - -0.7 765,067 + +1.7 765,067 + +1.3 765,067 + +0.4 765,068 - -0.6 765,068 - -0.0 765,155 - -0.6 765,155 - -2.3 765,161 + -2.0 765,162 - +0.7
Or see this region's nucleotide sequence