Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03395 and AO356_03400 are separated by 480 nucleotides AO356_03400 and AO356_03405 are separated by 2 nucleotides AO356_03405 and AO356_03410 overlap by 4 nucleotides
AO356_03395: AO356_03395 - polymerase, at 754,946 to 755,785
_03395
AO356_03400: AO356_03400 - aminotransferase DegT, at 756,266 to 757,348
_03400
AO356_03405: AO356_03405 - serine acetyltransferase, at 757,351 to 757,926
_03405
AO356_03410: AO356_03410 - acetyltransferase, at 757,923 to 759,773
_03410
Position (kb) 756
757
758 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 756.263 kb on - strand at 756.289 kb on + strand at 756.290 kb on - strand at 756.453 kb on - strand, within AO356_03400 at 756.574 kb on - strand, within AO356_03400 at 756.655 kb on + strand, within AO356_03400 at 756.811 kb on + strand, within AO356_03400 at 756.814 kb on + strand, within AO356_03400 at 756.815 kb on - strand, within AO356_03400 at 756.821 kb on + strand, within AO356_03400 at 756.855 kb on + strand, within AO356_03400 at 756.855 kb on + strand, within AO356_03400 at 756.904 kb on - strand, within AO356_03400 at 756.908 kb on - strand, within AO356_03400 at 756.988 kb on + strand, within AO356_03400 at 757.021 kb on + strand, within AO356_03400 at 757.021 kb on + strand, within AO356_03400 at 757.023 kb on + strand, within AO356_03400 at 757.024 kb on - strand, within AO356_03400 at 757.048 kb on - strand, within AO356_03400 at 757.094 kb on - strand, within AO356_03400 at 757.094 kb on - strand, within AO356_03400 at 757.096 kb on - strand, within AO356_03400 at 757.096 kb on - strand, within AO356_03400 at 757.113 kb on - strand, within AO356_03400 at 757.113 kb on - strand, within AO356_03400 at 757.113 kb on - strand, within AO356_03400 at 757.114 kb on + strand, within AO356_03400 at 757.187 kb on + strand, within AO356_03400 at 757.187 kb on + strand, within AO356_03400 at 757.188 kb on - strand, within AO356_03400 at 757.188 kb on - strand, within AO356_03400 at 757.258 kb on - strand at 757.309 kb on + strand at 757.309 kb on + strand at 757.310 kb on - strand at 757.310 kb on - strand at 757.310 kb on - strand at 757.505 kb on + strand, within AO356_03405 at 757.505 kb on + strand, within AO356_03405 at 757.553 kb on + strand, within AO356_03405 at 757.553 kb on + strand, within AO356_03405 at 757.631 kb on + strand, within AO356_03405 at 757.632 kb on - strand, within AO356_03405 at 757.632 kb on - strand, within AO356_03405 at 757.667 kb on + strand, within AO356_03405 at 757.668 kb on - strand, within AO356_03405 at 757.668 kb on - strand, within AO356_03405 at 757.702 kb on + strand, within AO356_03405 at 757.755 kb on + strand, within AO356_03405 at 757.916 kb on + strand at 757.916 kb on + strand at 757.917 kb on - strand at 757.917 kb on - strand at 757.919 kb on + strand at 757.919 kb on + strand at 757.920 kb on - strand at 757.920 kb on - strand at 757.943 kb on + strand at 757.943 kb on + strand at 757.944 kb on - strand at 757.944 kb on - strand at 757.944 kb on - strand at 757.987 kb on + strand at 757.988 kb on - strand at 757.988 kb on - strand at 757.988 kb on - strand at 757.988 kb on - strand at 758.010 kb on + strand at 758.010 kb on + strand at 758.010 kb on + strand at 758.011 kb on - strand at 758.011 kb on - strand at 758.038 kb on + strand at 758.038 kb on + strand at 758.060 kb on - strand at 758.241 kb on + strand, within AO356_03410 at 758.242 kb on - strand, within AO356_03410 at 758.261 kb on + strand, within AO356_03410 at 758.261 kb on + strand, within AO356_03410 at 758.262 kb on - strand, within AO356_03410 at 758.262 kb on - strand, within AO356_03410 at 758.262 kb on - strand, within AO356_03410 at 758.262 kb on - strand, within AO356_03410 at 758.283 kb on - strand, within AO356_03410
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 756,263 - +0.9 756,289 + +8.6 756,290 - +7.0 756,453 - AO356_03400 0.17 +7.9 756,574 - AO356_03400 0.28 +8.9 756,655 + AO356_03400 0.36 +3.9 756,811 + AO356_03400 0.50 +6.2 756,814 + AO356_03400 0.51 +6.5 756,815 - AO356_03400 0.51 +5.9 756,821 + AO356_03400 0.51 +8.2 756,855 + AO356_03400 0.54 +6.9 756,855 + AO356_03400 0.54 +5.0 756,904 - AO356_03400 0.59 +7.4 756,908 - AO356_03400 0.59 +7.0 756,988 + AO356_03400 0.67 +6.3 757,021 + AO356_03400 0.70 +6.2 757,021 + AO356_03400 0.70 +6.0 757,023 + AO356_03400 0.70 +6.9 757,024 - AO356_03400 0.70 +7.3 757,048 - AO356_03400 0.72 +6.8 757,094 - AO356_03400 0.76 +6.8 757,094 - AO356_03400 0.76 +8.0 757,096 - AO356_03400 0.77 +9.3 757,096 - AO356_03400 0.77 +7.9 757,113 - AO356_03400 0.78 +8.3 757,113 - AO356_03400 0.78 +6.6 757,113 - AO356_03400 0.78 +6.3 757,114 + AO356_03400 0.78 +8.0 757,187 + AO356_03400 0.85 +6.5 757,187 + AO356_03400 0.85 +8.3 757,188 - AO356_03400 0.85 +7.0 757,188 - AO356_03400 0.85 +7.0 757,258 - +8.6 757,309 + +6.6 757,309 + +6.8 757,310 - +5.3 757,310 - +7.1 757,310 - +7.4 757,505 + AO356_03405 0.27 +7.6 757,505 + AO356_03405 0.27 +7.3 757,553 + AO356_03405 0.35 +6.3 757,553 + AO356_03405 0.35 +8.9 757,631 + AO356_03405 0.49 +6.3 757,632 - AO356_03405 0.49 +8.0 757,632 - AO356_03405 0.49 +4.9 757,667 + AO356_03405 0.55 +5.8 757,668 - AO356_03405 0.55 +0.1 757,668 - AO356_03405 0.55 +6.3 757,702 + AO356_03405 0.61 +5.0 757,755 + AO356_03405 0.70 +7.1 757,916 + +5.6 757,916 + +7.8 757,917 - +6.2 757,917 - +6.4 757,919 + +5.4 757,919 + +5.6 757,920 - -0.6 757,920 - +6.8 757,943 + +6.1 757,943 + +5.7 757,944 - -0.6 757,944 - -2.0 757,944 - +0.9 757,987 + +4.3 757,988 - +0.8 757,988 - -0.3 757,988 - -2.3 757,988 - +0.2 758,010 + +2.2 758,010 + +2.8 758,010 + +4.3 758,011 - +1.2 758,011 - -0.7 758,038 + +2.0 758,038 + +1.8 758,060 - -0.6 758,241 + AO356_03410 0.17 +2.6 758,242 - AO356_03410 0.17 +0.9 758,261 + AO356_03410 0.18 +3.1 758,261 + AO356_03410 0.18 +4.3 758,262 - AO356_03410 0.18 +1.1 758,262 - AO356_03410 0.18 +0.6 758,262 - AO356_03410 0.18 -0.4 758,262 - AO356_03410 0.18 +1.0 758,283 - AO356_03410 0.19 +0.4
Or see this region's nucleotide sequence