Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02730

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02725 and AO356_02730 are separated by 66 nucleotidesAO356_02730 and AO356_02735 are separated by 24 nucleotides AO356_02725: AO356_02725 - ATP synthase, at 595,813 to 597,099 _02725 AO356_02730: AO356_02730 - type III secretion system protein InvA, at 597,166 to 599,217 _02730 AO356_02735: AO356_02735 - type III secretion regulator InvE, at 599,242 to 600,348 _02735 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 596.202 kb on - strand, within AO356_02725at 596.202 kb on - strand, within AO356_02725at 596.202 kb on - strand, within AO356_02725at 596.342 kb on + strand, within AO356_02725at 597.267 kb on - strandat 597.267 kb on - strandat 597.494 kb on + strand, within AO356_02730at 597.495 kb on - strand, within AO356_02730at 597.923 kb on + strand, within AO356_02730at 597.924 kb on - strand, within AO356_02730at 598.056 kb on - strand, within AO356_02730at 598.529 kb on + strand, within AO356_02730at 598.529 kb on + strand, within AO356_02730at 598.530 kb on - strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.561 kb on + strand, within AO356_02730at 598.562 kb on - strand, within AO356_02730at 598.608 kb on + strand, within AO356_02730at 598.608 kb on + strand, within AO356_02730at 598.608 kb on + strand, within AO356_02730at 598.609 kb on - strand, within AO356_02730at 598.670 kb on + strand, within AO356_02730at 598.671 kb on - strand, within AO356_02730at 598.671 kb on - strand, within AO356_02730at 598.671 kb on - strand, within AO356_02730at 599.726 kb on + strand, within AO356_02735at 599.727 kb on - strand, within AO356_02735at 599.747 kb on + strand, within AO356_02735at 599.790 kb on - strand, within AO356_02735

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
remove
596,202 - AO356_02725 0.30 -0.1
596,202 - AO356_02725 0.30 -1.7
596,202 - AO356_02725 0.30 -0.5
596,342 + AO356_02725 0.41 +0.3
597,267 - -0.4
597,267 - -1.3
597,494 + AO356_02730 0.16 +0.2
597,495 - AO356_02730 0.16 +1.0
597,923 + AO356_02730 0.37 +1.0
597,924 - AO356_02730 0.37 -0.5
598,056 - AO356_02730 0.43 +0.4
598,529 + AO356_02730 0.66 -0.3
598,529 + AO356_02730 0.66 +2.0
598,530 - AO356_02730 0.66 -0.6
598,561 + AO356_02730 0.68 +0.5
598,561 + AO356_02730 0.68 -0.3
598,561 + AO356_02730 0.68 -1.2
598,561 + AO356_02730 0.68 +1.0
598,561 + AO356_02730 0.68 -0.9
598,561 + AO356_02730 0.68 -0.9
598,561 + AO356_02730 0.68 +1.0
598,562 - AO356_02730 0.68 -1.9
598,608 + AO356_02730 0.70 +0.7
598,608 + AO356_02730 0.70 -0.4
598,608 + AO356_02730 0.70 -0.1
598,609 - AO356_02730 0.70 +0.7
598,670 + AO356_02730 0.73 -0.7
598,671 - AO356_02730 0.73 -0.6
598,671 - AO356_02730 0.73 -0.0
598,671 - AO356_02730 0.73 +1.3
599,726 + AO356_02735 0.44 -1.6
599,727 - AO356_02735 0.44 +0.1
599,747 + AO356_02735 0.46 +0.8
599,790 - AO356_02735 0.50 +0.8

Or see this region's nucleotide sequence