Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02695

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02690 and AO356_02695 overlap by 26 nucleotidesAO356_02695 and AO356_02700 are separated by 3 nucleotidesAO356_02700 and AO356_02705 are separated by 8 nucleotidesAO356_02705 and AO356_02710 overlap by 8 nucleotides AO356_02690: AO356_02690 - type III secretion system protein SpaS, at 590,851 to 591,885 _02690 AO356_02695: AO356_02695 - type III secretion system protein SpaR, at 591,860 to 592,663 _02695 AO356_02700: AO356_02700 - type III secretion system protein SpaQ, at 592,667 to 592,921 _02700 AO356_02705: AO356_02705 - type III secretion system protein, at 592,930 to 593,589 _02705 AO356_02710: AO356_02710 - flagellar motor switch/type III secretory pathway protein, at 593,582 to 594,511 _02710 Position (kb) 591 592 593Strain fitness (log2 ratio) -2 -1 0 1 2at 591.003 kb on - strand, within AO356_02690at 591.544 kb on + strand, within AO356_02690at 591.545 kb on - strand, within AO356_02690at 591.671 kb on + strand, within AO356_02690at 591.672 kb on - strand, within AO356_02690at 591.758 kb on + strand, within AO356_02690at 591.758 kb on + strand, within AO356_02690at 591.758 kb on + strand, within AO356_02690at 591.758 kb on + strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.759 kb on - strand, within AO356_02690at 591.975 kb on + strand, within AO356_02695at 591.976 kb on - strand, within AO356_02695at 591.976 kb on - strand, within AO356_02695at 591.976 kb on - strand, within AO356_02695at 592.203 kb on + strand, within AO356_02695at 592.203 kb on + strand, within AO356_02695at 592.494 kb on + strand, within AO356_02695at 592.494 kb on + strand, within AO356_02695at 592.668 kb on + strandat 592.885 kb on - strand, within AO356_02700at 592.885 kb on - strand, within AO356_02700at 592.905 kb on + strandat 592.906 kb on - strandat 592.906 kb on - strandat 592.931 kb on + strandat 592.931 kb on + strandat 592.932 kb on - strandat 592.949 kb on + strandat 592.949 kb on + strandat 592.950 kb on - strandat 592.950 kb on - strandat 593.108 kb on + strand, within AO356_02705at 593.108 kb on + strand, within AO356_02705at 593.108 kb on + strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.109 kb on - strand, within AO356_02705at 593.114 kb on + strand, within AO356_02705at 593.114 kb on + strand, within AO356_02705at 593.115 kb on - strand, within AO356_02705at 593.156 kb on + strand, within AO356_02705at 593.157 kb on - strand, within AO356_02705at 593.276 kb on + strand, within AO356_02705at 593.276 kb on + strand, within AO356_02705at 593.276 kb on + strand, within AO356_02705at 593.277 kb on - strand, within AO356_02705at 593.277 kb on - strand, within AO356_02705at 593.288 kb on + strand, within AO356_02705at 593.288 kb on + strand, within AO356_02705at 593.288 kb on + strand, within AO356_02705at 593.289 kb on - strand, within AO356_02705at 593.289 kb on - strand, within AO356_02705at 593.297 kb on + strand, within AO356_02705at 593.298 kb on - strand, within AO356_02705at 593.347 kb on - strand, within AO356_02705at 593.369 kb on + strand, within AO356_02705at 593.370 kb on - strand, within AO356_02705at 593.370 kb on - strand, within AO356_02705at 593.372 kb on + strand, within AO356_02705at 593.372 kb on + strand, within AO356_02705at 593.513 kb on + strand, within AO356_02705at 593.514 kb on - strand, within AO356_02705

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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591,003 - AO356_02690 0.15 -0.1
591,544 + AO356_02690 0.67 -0.8
591,545 - AO356_02690 0.67 -1.2
591,671 + AO356_02690 0.79 -1.3
591,672 - AO356_02690 0.79 -1.0
591,758 + AO356_02690 0.88 -0.6
591,758 + AO356_02690 0.88 -1.1
591,758 + AO356_02690 0.88 -0.6
591,758 + AO356_02690 0.88 +0.6
591,759 - AO356_02690 0.88 +0.4
591,759 - AO356_02690 0.88 -1.1
591,759 - AO356_02690 0.88 -0.9
591,759 - AO356_02690 0.88 +0.3
591,759 - AO356_02690 0.88 -1.1
591,759 - AO356_02690 0.88 -1.0
591,759 - AO356_02690 0.88 -0.5
591,975 + AO356_02695 0.14 -0.0
591,976 - AO356_02695 0.14 -0.1
591,976 - AO356_02695 0.14 -0.4
591,976 - AO356_02695 0.14 +0.5
592,203 + AO356_02695 0.43 -0.1
592,203 + AO356_02695 0.43 -1.2
592,494 + AO356_02695 0.79 +1.0
592,494 + AO356_02695 0.79 +0.5
592,668 + -1.0
592,885 - AO356_02700 0.85 -0.2
592,885 - AO356_02700 0.85 +0.4
592,905 + -1.6
592,906 - +0.5
592,906 - +0.0
592,931 + -1.1
592,931 + -0.5
592,932 - +1.5
592,949 + +0.8
592,949 + -0.4
592,950 - -0.3
592,950 - -0.5
593,108 + AO356_02705 0.27 +0.3
593,108 + AO356_02705 0.27 -2.5
593,108 + AO356_02705 0.27 +0.4
593,109 - AO356_02705 0.27 +0.7
593,109 - AO356_02705 0.27 -0.2
593,109 - AO356_02705 0.27 -1.8
593,109 - AO356_02705 0.27 +0.6
593,114 + AO356_02705 0.28 +0.2
593,114 + AO356_02705 0.28 -0.4
593,115 - AO356_02705 0.28 -1.9
593,156 + AO356_02705 0.34 +1.0
593,157 - AO356_02705 0.34 +0.2
593,276 + AO356_02705 0.52 -1.0
593,276 + AO356_02705 0.52 +0.4
593,276 + AO356_02705 0.52 -1.6
593,277 - AO356_02705 0.53 -2.4
593,277 - AO356_02705 0.53 -0.4
593,288 + AO356_02705 0.54 -0.8
593,288 + AO356_02705 0.54 -1.5
593,288 + AO356_02705 0.54 -0.1
593,289 - AO356_02705 0.54 -0.1
593,289 - AO356_02705 0.54 -1.1
593,297 + AO356_02705 0.56 +0.8
593,298 - AO356_02705 0.56 +0.4
593,347 - AO356_02705 0.63 -0.6
593,369 + AO356_02705 0.67 +0.4
593,370 - AO356_02705 0.67 -1.7
593,370 - AO356_02705 0.67 +0.3
593,372 + AO356_02705 0.67 -0.0
593,372 + AO356_02705 0.67 +1.9
593,513 + AO356_02705 0.88 -0.1
593,514 - AO356_02705 0.88 +0.2

Or see this region's nucleotide sequence