Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02575 and AO356_02580 are separated by 122 nucleotides AO356_02580 and AO356_02585 are separated by 355 nucleotides
AO356_02575: AO356_02575 - guanine deaminase, at 564,867 to 566,171
_02575
AO356_02580: AO356_02580 - GntR family transcriptional regulator, at 566,294 to 567,058
_02580
AO356_02585: AO356_02585 - hypothetical protein, at 567,414 to 568,604
_02585
Position (kb) 566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 565.383 kb on + strand, within AO356_02575 at 565.384 kb on - strand, within AO356_02575 at 565.384 kb on - strand, within AO356_02575 at 565.384 kb on - strand, within AO356_02575 at 565.464 kb on + strand, within AO356_02575 at 565.464 kb on + strand, within AO356_02575 at 565.465 kb on - strand, within AO356_02575 at 565.551 kb on + strand, within AO356_02575 at 565.551 kb on + strand, within AO356_02575 at 565.551 kb on + strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.552 kb on - strand, within AO356_02575 at 565.639 kb on - strand, within AO356_02575 at 565.639 kb on - strand, within AO356_02575 at 565.639 kb on - strand, within AO356_02575 at 565.639 kb on - strand, within AO356_02575 at 565.819 kb on + strand, within AO356_02575 at 565.819 kb on + strand, within AO356_02575 at 565.819 kb on + strand, within AO356_02575 at 565.820 kb on - strand, within AO356_02575 at 565.820 kb on - strand, within AO356_02575 at 565.820 kb on - strand, within AO356_02575 at 565.820 kb on - strand, within AO356_02575 at 565.884 kb on + strand, within AO356_02575 at 565.885 kb on - strand, within AO356_02575 at 565.885 kb on - strand, within AO356_02575 at 565.885 kb on - strand, within AO356_02575 at 565.885 kb on - strand, within AO356_02575 at 565.885 kb on - strand, within AO356_02575 at 565.900 kb on + strand, within AO356_02575 at 565.900 kb on + strand, within AO356_02575 at 565.900 kb on + strand, within AO356_02575 at 565.900 kb on + strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.901 kb on - strand, within AO356_02575 at 565.935 kb on + strand, within AO356_02575 at 566.031 kb on + strand, within AO356_02575 at 566.031 kb on + strand, within AO356_02575 at 566.031 kb on + strand, within AO356_02575 at 566.032 kb on - strand, within AO356_02575 at 566.032 kb on - strand, within AO356_02575 at 566.032 kb on - strand, within AO356_02575 at 566.139 kb on + strand at 566.139 kb on + strand at 566.140 kb on - strand at 566.140 kb on - strand at 566.140 kb on - strand at 566.169 kb on + strand at 566.277 kb on + strand at 566.277 kb on + strand at 566.278 kb on - strand at 566.520 kb on + strand, within AO356_02580 at 566.968 kb on + strand, within AO356_02580 at 566.968 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.976 kb on + strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 566.977 kb on - strand, within AO356_02580 at 567.013 kb on + strand at 567.102 kb on + strand at 567.102 kb on + strand at 567.105 kb on + strand at 567.130 kb on + strand at 567.131 kb on - strand at 567.155 kb on + strand at 567.184 kb on - strand at 567.184 kb on - strand at 567.184 kb on - strand at 567.208 kb on - strand at 567.235 kb on - strand at 567.235 kb on - strand at 567.235 kb on - strand at 567.241 kb on - strand at 567.241 kb on - strand at 567.241 kb on - strand at 567.386 kb on + strand at 567.386 kb on + strand at 567.387 kb on - strand at 567.387 kb on - strand at 567.387 kb on - strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.391 kb on + strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.392 kb on - strand at 567.393 kb on + strand at 567.393 kb on + strand at 567.394 kb on - strand at 567.394 kb on - strand at 567.455 kb on + strand at 567.709 kb on - strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.729 kb on + strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.730 kb on - strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.731 kb on + strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.732 kb on - strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.733 kb on + strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.734 kb on - strand, within AO356_02585 at 567.912 kb on + strand, within AO356_02585 at 567.912 kb on + strand, within AO356_02585 at 567.913 kb on - strand, within AO356_02585
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 565,383 + AO356_02575 0.40 -1.3 565,384 - AO356_02575 0.40 +0.6 565,384 - AO356_02575 0.40 -1.9 565,384 - AO356_02575 0.40 -0.1 565,464 + AO356_02575 0.46 +0.6 565,464 + AO356_02575 0.46 +0.3 565,465 - AO356_02575 0.46 -0.4 565,551 + AO356_02575 0.52 +2.9 565,551 + AO356_02575 0.52 +1.2 565,551 + AO356_02575 0.52 -0.1 565,552 - AO356_02575 0.52 -0.5 565,552 - AO356_02575 0.52 -1.4 565,552 - AO356_02575 0.52 +1.2 565,552 - AO356_02575 0.52 +0.5 565,552 - AO356_02575 0.52 -0.4 565,552 - AO356_02575 0.52 -0.7 565,552 - AO356_02575 0.52 -0.4 565,552 - AO356_02575 0.52 +0.5 565,552 - AO356_02575 0.52 +0.1 565,639 - AO356_02575 0.59 -2.0 565,639 - AO356_02575 0.59 +0.2 565,639 - AO356_02575 0.59 -0.7 565,639 - AO356_02575 0.59 +0.7 565,819 + AO356_02575 0.73 +0.2 565,819 + AO356_02575 0.73 -1.2 565,819 + AO356_02575 0.73 +0.1 565,820 - AO356_02575 0.73 +1.2 565,820 - AO356_02575 0.73 +0.7 565,820 - AO356_02575 0.73 -0.6 565,820 - AO356_02575 0.73 +0.4 565,884 + AO356_02575 0.78 +0.7 565,885 - AO356_02575 0.78 -1.3 565,885 - AO356_02575 0.78 -1.1 565,885 - AO356_02575 0.78 -2.5 565,885 - AO356_02575 0.78 +0.8 565,885 - AO356_02575 0.78 -1.7 565,900 + AO356_02575 0.79 -0.9 565,900 + AO356_02575 0.79 -0.3 565,900 + AO356_02575 0.79 +0.0 565,900 + AO356_02575 0.79 -2.2 565,901 - AO356_02575 0.79 -1.9 565,901 - AO356_02575 0.79 -0.8 565,901 - AO356_02575 0.79 -0.1 565,901 - AO356_02575 0.79 -1.2 565,901 - AO356_02575 0.79 +0.2 565,901 - AO356_02575 0.79 -0.9 565,901 - AO356_02575 0.79 +0.5 565,901 - AO356_02575 0.79 -0.1 565,935 + AO356_02575 0.82 -0.7 566,031 + AO356_02575 0.89 -1.3 566,031 + AO356_02575 0.89 -2.1 566,031 + AO356_02575 0.89 -2.2 566,032 - AO356_02575 0.89 -0.4 566,032 - AO356_02575 0.89 +0.0 566,032 - AO356_02575 0.89 +0.2 566,139 + +1.5 566,139 + +1.4 566,140 - -2.5 566,140 - -2.6 566,140 - -3.1 566,169 + -0.9 566,277 + -1.7 566,277 + +0.1 566,278 - +0.6 566,520 + AO356_02580 0.30 +0.2 566,968 + AO356_02580 0.88 -1.3 566,968 + AO356_02580 0.88 -1.4 566,976 + AO356_02580 0.89 -1.7 566,976 + AO356_02580 0.89 +1.3 566,976 + AO356_02580 0.89 -1.0 566,977 - AO356_02580 0.89 +0.2 566,977 - AO356_02580 0.89 -0.4 566,977 - AO356_02580 0.89 +0.2 567,013 + +1.0 567,102 + +0.9 567,102 + -0.8 567,105 + -1.8 567,130 + -0.5 567,131 - +1.3 567,155 + -2.2 567,184 - -0.2 567,184 - +0.2 567,184 - +0.5 567,208 - -0.1 567,235 - +0.7 567,235 - -1.5 567,235 - -1.3 567,241 - -0.3 567,241 - -1.4 567,241 - -0.6 567,386 + -1.2 567,386 + +0.5 567,387 - +0.1 567,387 - -0.7 567,387 - -2.4 567,391 + -0.2 567,391 + +0.9 567,391 + -0.6 567,391 + +0.5 567,391 + -0.6 567,391 + +0.7 567,392 - -1.5 567,392 - +0.7 567,392 - +0.7 567,392 - -1.4 567,392 - -0.9 567,392 - -0.0 567,392 - +0.4 567,392 - -0.4 567,392 - -2.7 567,392 - -2.0 567,392 - -0.3 567,393 + -0.3 567,393 + +0.7 567,394 - +0.5 567,394 - +0.8 567,455 + +0.2 567,709 - AO356_02585 0.25 +0.3 567,729 + AO356_02585 0.26 +1.7 567,729 + AO356_02585 0.26 -0.3 567,729 + AO356_02585 0.26 +0.5 567,729 + AO356_02585 0.26 +0.2 567,729 + AO356_02585 0.26 -0.8 567,730 - AO356_02585 0.27 -1.0 567,730 - AO356_02585 0.27 -1.3 567,730 - AO356_02585 0.27 -0.8 567,731 + AO356_02585 0.27 -0.6 567,731 + AO356_02585 0.27 +1.1 567,731 + AO356_02585 0.27 -0.7 567,731 + AO356_02585 0.27 -1.3 567,731 + AO356_02585 0.27 -1.1 567,731 + AO356_02585 0.27 +0.4 567,731 + AO356_02585 0.27 -1.6 567,732 - AO356_02585 0.27 -0.0 567,732 - AO356_02585 0.27 -0.1 567,732 - AO356_02585 0.27 -2.2 567,732 - AO356_02585 0.27 +0.2 567,732 - AO356_02585 0.27 +0.9 567,732 - AO356_02585 0.27 -0.4 567,733 + AO356_02585 0.27 +0.3 567,733 + AO356_02585 0.27 +1.0 567,733 + AO356_02585 0.27 -0.9 567,733 + AO356_02585 0.27 +0.9 567,733 + AO356_02585 0.27 -1.1 567,733 + AO356_02585 0.27 -0.3 567,733 + AO356_02585 0.27 +0.4 567,733 + AO356_02585 0.27 +0.5 567,734 - AO356_02585 0.27 +0.6 567,734 - AO356_02585 0.27 -0.6 567,734 - AO356_02585 0.27 +0.7 567,734 - AO356_02585 0.27 +0.2 567,734 - AO356_02585 0.27 +0.1 567,912 + AO356_02585 0.42 -1.1 567,912 + AO356_02585 0.42 -0.4 567,913 - AO356_02585 0.42 +1.7
Or see this region's nucleotide sequence