Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02575

Experiment: P5ss-5 phage 10-1 dilution SM calcl2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02565 and AO356_02570 are separated by 124 nucleotidesAO356_02570 and AO356_02575 are separated by 19 nucleotidesAO356_02575 and AO356_02580 are separated by 122 nucleotides AO356_02565: AO356_02565 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 561,481 to 563,880 _02565 AO356_02570: AO356_02570 - molybdenum cofactor sulfurylase, at 564,005 to 564,847 _02570 AO356_02575: AO356_02575 - guanine deaminase, at 564,867 to 566,171 _02575 AO356_02580: AO356_02580 - GntR family transcriptional regulator, at 566,294 to 567,058 _02580 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 563.878 kb on + strandat 563.923 kb on + strandat 563.924 kb on - strandat 563.924 kb on - strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.004 kb on + strandat 564.005 kb on - strandat 564.005 kb on - strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.008 kb on + strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.009 kb on - strandat 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.170 kb on + strand, within AO356_02570at 564.171 kb on - strand, within AO356_02570at 564.221 kb on - strand, within AO356_02570at 564.503 kb on + strand, within AO356_02570at 564.503 kb on + strand, within AO356_02570at 564.504 kb on - strand, within AO356_02570at 564.582 kb on - strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.758 kb on + strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.759 kb on - strand, within AO356_02570at 564.761 kb on - strand, within AO356_02570at 564.761 kb on - strand, within AO356_02570at 564.948 kb on + strandat 564.948 kb on + strandat 564.949 kb on - strandat 564.949 kb on - strandat 564.954 kb on + strandat 564.954 kb on + strandat 564.955 kb on - strandat 565.014 kb on + strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.015 kb on - strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.167 kb on + strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.168 kb on - strand, within AO356_02575at 565.227 kb on - strand, within AO356_02575at 565.383 kb on + strand, within AO356_02575at 565.384 kb on - strand, within AO356_02575at 565.384 kb on - strand, within AO356_02575at 565.384 kb on - strand, within AO356_02575at 565.464 kb on + strand, within AO356_02575at 565.464 kb on + strand, within AO356_02575at 565.465 kb on - strand, within AO356_02575at 565.551 kb on + strand, within AO356_02575at 565.551 kb on + strand, within AO356_02575at 565.551 kb on + strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.552 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.639 kb on - strand, within AO356_02575at 565.819 kb on + strand, within AO356_02575at 565.819 kb on + strand, within AO356_02575at 565.819 kb on + strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.820 kb on - strand, within AO356_02575at 565.884 kb on + strand, within AO356_02575at 565.885 kb on - strand, within AO356_02575at 565.885 kb on - strand, within AO356_02575at 565.885 kb on - strand, within AO356_02575at 565.885 kb on - strand, within AO356_02575at 565.885 kb on - strand, within AO356_02575at 565.900 kb on + strand, within AO356_02575at 565.900 kb on + strand, within AO356_02575at 565.900 kb on + strand, within AO356_02575at 565.900 kb on + strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.901 kb on - strand, within AO356_02575at 565.935 kb on + strand, within AO356_02575at 566.031 kb on + strand, within AO356_02575at 566.031 kb on + strand, within AO356_02575at 566.031 kb on + strand, within AO356_02575at 566.032 kb on - strand, within AO356_02575at 566.032 kb on - strand, within AO356_02575at 566.032 kb on - strand, within AO356_02575at 566.139 kb on + strandat 566.139 kb on + strandat 566.140 kb on - strandat 566.140 kb on - strandat 566.140 kb on - strandat 566.169 kb on + strandat 566.277 kb on + strandat 566.277 kb on + strandat 566.278 kb on - strandat 566.520 kb on + strand, within AO356_02580at 566.968 kb on + strand, within AO356_02580at 566.968 kb on + strand, within AO356_02580at 566.976 kb on + strand, within AO356_02580at 566.976 kb on + strand, within AO356_02580at 566.976 kb on + strand, within AO356_02580at 566.977 kb on - strand, within AO356_02580at 566.977 kb on - strand, within AO356_02580at 566.977 kb on - strand, within AO356_02580at 567.013 kb on + strandat 567.102 kb on + strandat 567.102 kb on + strandat 567.105 kb on + strandat 567.130 kb on + strandat 567.131 kb on - strandat 567.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2
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563,878 + +0.9
563,923 + +0.5
563,924 - +0.6
563,924 - -2.3
564,004 + -0.1
564,004 + -0.6
564,004 + -0.8
564,004 + +0.0
564,004 + +0.6
564,004 + +0.1
564,004 + +0.7
564,005 - -0.2
564,005 - -2.1
564,008 + -0.5
564,008 + +0.9
564,008 + -0.9
564,008 + +0.5
564,008 + +0.1
564,008 + -0.4
564,008 + -0.7
564,008 + +1.1
564,008 + +0.7
564,008 + -0.8
564,009 - +1.7
564,009 - +0.1
564,009 - -0.4
564,009 - -2.0
564,009 - +0.0
564,009 - -1.8
564,170 + AO356_02570 0.20 +0.7
564,170 + AO356_02570 0.20 +0.3
564,170 + AO356_02570 0.20 -0.8
564,170 + AO356_02570 0.20 +0.3
564,170 + AO356_02570 0.20 +2.0
564,170 + AO356_02570 0.20 +2.2
564,171 - AO356_02570 0.20 -0.6
564,221 - AO356_02570 0.26 +0.4
564,503 + AO356_02570 0.59 -0.7
564,503 + AO356_02570 0.59 +0.4
564,504 - AO356_02570 0.59 -0.3
564,582 - AO356_02570 0.68 +0.2
564,758 + AO356_02570 0.89 -0.0
564,758 + AO356_02570 0.89 -1.4
564,758 + AO356_02570 0.89 +0.9
564,758 + AO356_02570 0.89 +0.4
564,758 + AO356_02570 0.89 +2.3
564,758 + AO356_02570 0.89 +1.2
564,758 + AO356_02570 0.89 -0.1
564,759 - AO356_02570 0.89 +0.4
564,759 - AO356_02570 0.89 +2.0
564,759 - AO356_02570 0.89 +0.9
564,759 - AO356_02570 0.89 -0.8
564,761 - AO356_02570 0.90 -0.8
564,761 - AO356_02570 0.90 -0.5
564,948 + -1.0
564,948 + -0.4
564,949 - -0.7
564,949 - +1.2
564,954 + -2.2
564,954 + -1.2
564,955 - +0.3
565,014 + AO356_02575 0.11 -1.7
565,015 - AO356_02575 0.11 +0.3
565,015 - AO356_02575 0.11 +0.1
565,015 - AO356_02575 0.11 -1.4
565,015 - AO356_02575 0.11 +0.2
565,167 + AO356_02575 0.23 +0.8
565,167 + AO356_02575 0.23 +1.1
565,167 + AO356_02575 0.23 -0.0
565,167 + AO356_02575 0.23 +0.2
565,168 - AO356_02575 0.23 +0.8
565,168 - AO356_02575 0.23 +0.6
565,168 - AO356_02575 0.23 -0.2
565,168 - AO356_02575 0.23 +0.0
565,227 - AO356_02575 0.28 +0.6
565,383 + AO356_02575 0.40 -1.3
565,384 - AO356_02575 0.40 +0.6
565,384 - AO356_02575 0.40 -1.9
565,384 - AO356_02575 0.40 -0.1
565,464 + AO356_02575 0.46 +0.6
565,464 + AO356_02575 0.46 +0.3
565,465 - AO356_02575 0.46 -0.4
565,551 + AO356_02575 0.52 +2.9
565,551 + AO356_02575 0.52 +1.2
565,551 + AO356_02575 0.52 -0.1
565,552 - AO356_02575 0.52 -0.5
565,552 - AO356_02575 0.52 -1.4
565,552 - AO356_02575 0.52 +1.2
565,552 - AO356_02575 0.52 +0.5
565,552 - AO356_02575 0.52 -0.4
565,552 - AO356_02575 0.52 -0.7
565,552 - AO356_02575 0.52 -0.4
565,552 - AO356_02575 0.52 +0.5
565,552 - AO356_02575 0.52 +0.1
565,639 - AO356_02575 0.59 -2.0
565,639 - AO356_02575 0.59 +0.2
565,639 - AO356_02575 0.59 -0.7
565,639 - AO356_02575 0.59 +0.7
565,819 + AO356_02575 0.73 +0.2
565,819 + AO356_02575 0.73 -1.2
565,819 + AO356_02575 0.73 +0.1
565,820 - AO356_02575 0.73 +1.2
565,820 - AO356_02575 0.73 +0.7
565,820 - AO356_02575 0.73 -0.6
565,820 - AO356_02575 0.73 +0.4
565,884 + AO356_02575 0.78 +0.7
565,885 - AO356_02575 0.78 -1.3
565,885 - AO356_02575 0.78 -1.1
565,885 - AO356_02575 0.78 -2.5
565,885 - AO356_02575 0.78 +0.8
565,885 - AO356_02575 0.78 -1.7
565,900 + AO356_02575 0.79 -0.9
565,900 + AO356_02575 0.79 -0.3
565,900 + AO356_02575 0.79 +0.0
565,900 + AO356_02575 0.79 -2.2
565,901 - AO356_02575 0.79 -1.9
565,901 - AO356_02575 0.79 -0.8
565,901 - AO356_02575 0.79 -0.1
565,901 - AO356_02575 0.79 -1.2
565,901 - AO356_02575 0.79 +0.2
565,901 - AO356_02575 0.79 -0.9
565,901 - AO356_02575 0.79 +0.5
565,901 - AO356_02575 0.79 -0.1
565,935 + AO356_02575 0.82 -0.7
566,031 + AO356_02575 0.89 -1.3
566,031 + AO356_02575 0.89 -2.1
566,031 + AO356_02575 0.89 -2.2
566,032 - AO356_02575 0.89 -0.4
566,032 - AO356_02575 0.89 +0.0
566,032 - AO356_02575 0.89 +0.2
566,139 + +1.5
566,139 + +1.4
566,140 - -2.5
566,140 - -2.6
566,140 - -3.1
566,169 + -0.9
566,277 + -1.7
566,277 + +0.1
566,278 - +0.6
566,520 + AO356_02580 0.30 +0.2
566,968 + AO356_02580 0.88 -1.3
566,968 + AO356_02580 0.88 -1.4
566,976 + AO356_02580 0.89 -1.7
566,976 + AO356_02580 0.89 +1.3
566,976 + AO356_02580 0.89 -1.0
566,977 - AO356_02580 0.89 +0.2
566,977 - AO356_02580 0.89 -0.4
566,977 - AO356_02580 0.89 +0.2
567,013 + +1.0
567,102 + +0.9
567,102 + -0.8
567,105 + -1.8
567,130 + -0.5
567,131 - +1.3
567,155 + -2.2

Or see this region's nucleotide sequence