Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01680 and AO356_01685 are separated by 219 nucleotides AO356_01685 and AO356_01690 are separated by 123 nucleotides AO356_01690 and AO356_01695 are separated by 7 nucleotides
AO356_01680: AO356_01680 - transcriptional regulator, at 377,837 to 378,541
_01680
AO356_01685: AO356_01685 - type IV secretion protein Rhs, at 378,761 to 380,167
_01685
AO356_01690: AO356_01690 - cytochrome B, at 380,291 to 380,839
_01690
AO356_01695: AO356_01695 - 1-aminocyclopropane-1-carboxylate deaminase, at 380,847 to 381,755
_01695
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.809 kb on + strand at 377.809 kb on + strand at 377.810 kb on - strand at 377.810 kb on - strand at 377.832 kb on - strand at 377.838 kb on + strand at 377.839 kb on - strand at 378.229 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.295 kb on - strand, within AO356_01680 at 378.295 kb on - strand, within AO356_01680 at 378.309 kb on + strand, within AO356_01680 at 378.310 kb on - strand, within AO356_01680 at 378.521 kb on - strand at 378.543 kb on - strand at 378.543 kb on - strand at 378.601 kb on + strand at 378.601 kb on + strand at 378.601 kb on + strand at 378.602 kb on - strand at 378.602 kb on - strand at 378.671 kb on - strand at 378.750 kb on + strand at 378.751 kb on - strand at 378.751 kb on - strand at 378.904 kb on - strand, within AO356_01685 at 379.040 kb on + strand, within AO356_01685 at 379.149 kb on - strand, within AO356_01685 at 379.175 kb on + strand, within AO356_01685 at 379.260 kb on - strand, within AO356_01685 at 379.388 kb on + strand, within AO356_01685 at 379.388 kb on + strand, within AO356_01685 at 379.389 kb on - strand, within AO356_01685 at 379.411 kb on - strand, within AO356_01685 at 379.411 kb on - strand, within AO356_01685 at 379.411 kb on - strand, within AO356_01685 at 379.854 kb on + strand, within AO356_01685 at 379.854 kb on + strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 379.855 kb on - strand, within AO356_01685 at 380.233 kb on - strand at 380.233 kb on - strand at 380.233 kb on - strand at 380.237 kb on + strand at 380.237 kb on + strand at 380.323 kb on + strand at 380.323 kb on + strand at 380.323 kb on + strand at 380.324 kb on - strand at 380.324 kb on - strand at 380.582 kb on + strand, within AO356_01690 at 380.583 kb on - strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.654 kb on + strand, within AO356_01690 at 380.655 kb on - strand, within AO356_01690 at 380.655 kb on - strand, within AO356_01690 at 380.655 kb on - strand, within AO356_01690 at 380.790 kb on - strand at 380.790 kb on - strand at 380.790 kb on - strand at 380.966 kb on - strand, within AO356_01695 at 381.151 kb on + strand, within AO356_01695
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 377,809 + -0.6 377,809 + -0.6 377,810 - +0.2 377,810 - -0.7 377,832 - -1.9 377,838 + +1.8 377,839 - -2.4 378,229 + AO356_01680 0.56 +0.5 378,294 + AO356_01680 0.65 -2.5 378,294 + AO356_01680 0.65 -0.1 378,294 + AO356_01680 0.65 +1.8 378,294 + AO356_01680 0.65 -0.3 378,294 + AO356_01680 0.65 +0.2 378,294 + AO356_01680 0.65 -1.1 378,295 - AO356_01680 0.65 +0.2 378,295 - AO356_01680 0.65 -0.1 378,309 + AO356_01680 0.67 -0.3 378,310 - AO356_01680 0.67 +0.2 378,521 - +0.4 378,543 - +1.8 378,543 - -0.9 378,601 + +2.0 378,601 + -2.5 378,601 + -2.2 378,602 - +0.1 378,602 - -0.0 378,671 - +0.1 378,750 + -0.7 378,751 - +1.7 378,751 - +0.1 378,904 - AO356_01685 0.10 +0.5 379,040 + AO356_01685 0.20 +0.3 379,149 - AO356_01685 0.28 +0.1 379,175 + AO356_01685 0.29 -2.3 379,260 - AO356_01685 0.35 -0.1 379,388 + AO356_01685 0.45 -0.6 379,388 + AO356_01685 0.45 -0.2 379,389 - AO356_01685 0.45 -0.0 379,411 - AO356_01685 0.46 +0.4 379,411 - AO356_01685 0.46 +0.3 379,411 - AO356_01685 0.46 -0.7 379,854 + AO356_01685 0.78 -0.3 379,854 + AO356_01685 0.78 -0.4 379,855 - AO356_01685 0.78 -2.3 379,855 - AO356_01685 0.78 -1.0 379,855 - AO356_01685 0.78 -2.9 379,855 - AO356_01685 0.78 +2.2 379,855 - AO356_01685 0.78 +0.2 380,233 - +0.9 380,233 - +0.5 380,233 - -0.4 380,237 + +0.0 380,237 + -0.8 380,323 + +0.4 380,323 + -0.3 380,323 + +0.2 380,324 - +0.1 380,324 - +1.3 380,582 + AO356_01690 0.53 +0.8 380,583 - AO356_01690 0.53 -0.1 380,654 + AO356_01690 0.66 +0.3 380,654 + AO356_01690 0.66 -0.2 380,654 + AO356_01690 0.66 +0.5 380,654 + AO356_01690 0.66 +1.2 380,655 - AO356_01690 0.66 +0.3 380,655 - AO356_01690 0.66 -0.2 380,655 - AO356_01690 0.66 -0.2 380,790 - -0.3 380,790 - +0.9 380,790 - -0.1 380,966 - AO356_01695 0.13 -2.5 381,151 + AO356_01695 0.33 -0.6
Or see this region's nucleotide sequence