Experiment: P5ss-5 phage 10-1 dilution SM calcl2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01325 and AO356_01330 are separated by 318 nucleotides AO356_01330 and AO356_01335 are separated by 69 nucleotides AO356_01335 and AO356_01340 overlap by 4 nucleotides AO356_01340 and AO356_01345 overlap by 20 nucleotides
AO356_01325: AO356_01325 - DNA polymerase II, at 307,352 to 309,715
_01325
AO356_01330: AO356_01330 - histidine kinase, at 310,034 to 310,474
_01330
AO356_01335: AO356_01335 - paraquat-inducible protein A, at 310,544 to 311,140
_01335
AO356_01340: AO356_01340 - paraquat-inducible protein A, at 311,137 to 311,796
_01340
AO356_01345: AO356_01345 - mammalian cell entry protein, at 311,777 to 313,435
_01345
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.708 kb on - strand at 309.751 kb on + strand at 309.751 kb on + strand at 309.752 kb on - strand at 309.797 kb on + strand at 309.798 kb on - strand at 309.839 kb on + strand at 309.840 kb on - strand at 309.870 kb on - strand at 309.870 kb on - strand at 309.912 kb on + strand at 309.913 kb on - strand at 309.993 kb on - strand at 309.993 kb on - strand at 309.993 kb on - strand at 310.072 kb on + strand at 310.072 kb on + strand at 310.113 kb on + strand, within AO356_01330 at 310.114 kb on - strand, within AO356_01330 at 310.114 kb on - strand, within AO356_01330 at 310.114 kb on - strand, within AO356_01330 at 310.208 kb on + strand, within AO356_01330 at 310.208 kb on + strand, within AO356_01330 at 310.209 kb on - strand, within AO356_01330 at 310.209 kb on - strand, within AO356_01330 at 310.362 kb on + strand, within AO356_01330 at 310.362 kb on + strand, within AO356_01330 at 310.362 kb on + strand, within AO356_01330 at 310.363 kb on - strand, within AO356_01330 at 310.363 kb on - strand, within AO356_01330 at 310.457 kb on + strand at 310.457 kb on + strand at 310.458 kb on - strand at 310.458 kb on - strand at 310.511 kb on + strand at 310.511 kb on + strand at 310.511 kb on + strand at 310.511 kb on + strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.512 kb on - strand at 310.513 kb on + strand at 310.514 kb on - strand at 310.593 kb on - strand at 310.593 kb on - strand at 310.751 kb on - strand, within AO356_01335 at 310.822 kb on + strand, within AO356_01335 at 310.822 kb on + strand, within AO356_01335 at 310.823 kb on - strand, within AO356_01335 at 310.910 kb on + strand, within AO356_01335 at 310.911 kb on - strand, within AO356_01335 at 310.911 kb on - strand, within AO356_01335 at 310.911 kb on - strand, within AO356_01335 at 311.305 kb on + strand, within AO356_01340 at 311.305 kb on + strand, within AO356_01340 at 311.305 kb on + strand, within AO356_01340 at 311.305 kb on + strand, within AO356_01340 at 311.305 kb on + strand, within AO356_01340 at 311.306 kb on - strand, within AO356_01340 at 311.329 kb on + strand, within AO356_01340 at 311.329 kb on + strand, within AO356_01340 at 311.330 kb on - strand, within AO356_01340 at 311.330 kb on - strand, within AO356_01340 at 311.330 kb on - strand, within AO356_01340 at 311.330 kb on - strand, within AO356_01340 at 311.451 kb on + strand, within AO356_01340 at 311.452 kb on - strand, within AO356_01340 at 311.452 kb on - strand, within AO356_01340 at 311.496 kb on - strand, within AO356_01340 at 311.496 kb on - strand, within AO356_01340 at 311.519 kb on + strand, within AO356_01340 at 311.519 kb on + strand, within AO356_01340 at 311.519 kb on + strand, within AO356_01340 at 311.532 kb on + strand, within AO356_01340 at 311.533 kb on - strand, within AO356_01340 at 311.994 kb on - strand, within AO356_01345 at 312.124 kb on - strand, within AO356_01345
Per-strain Table
Position Strand Gene LocusTag Fraction P5ss-5 phage 10-1 dilution SM calcl2 remove 309,708 - -1.0 309,751 + +0.3 309,751 + +0.8 309,752 - +0.3 309,797 + +0.6 309,798 - +0.4 309,839 + -1.0 309,840 - +2.0 309,870 - -0.8 309,870 - -2.7 309,912 + -0.7 309,913 - -0.1 309,993 - -0.6 309,993 - +0.6 309,993 - +0.7 310,072 + -0.2 310,072 + -1.0 310,113 + AO356_01330 0.18 +0.4 310,114 - AO356_01330 0.18 -0.1 310,114 - AO356_01330 0.18 +0.4 310,114 - AO356_01330 0.18 -1.0 310,208 + AO356_01330 0.39 -0.4 310,208 + AO356_01330 0.39 +0.2 310,209 - AO356_01330 0.40 +0.4 310,209 - AO356_01330 0.40 -0.1 310,362 + AO356_01330 0.74 -0.8 310,362 + AO356_01330 0.74 -0.9 310,362 + AO356_01330 0.74 +0.0 310,363 - AO356_01330 0.75 -0.3 310,363 - AO356_01330 0.75 -0.3 310,457 + -0.3 310,457 + +0.3 310,458 - +0.3 310,458 - -0.4 310,511 + -0.7 310,511 + +0.8 310,511 + +0.4 310,511 + +0.8 310,512 - -0.9 310,512 - -0.4 310,512 - -0.6 310,512 - -0.2 310,512 - -0.6 310,512 - -2.3 310,512 - +0.4 310,512 - -0.3 310,512 - +1.2 310,513 + +2.3 310,514 - -0.1 310,593 - +0.0 310,593 - +0.0 310,751 - AO356_01335 0.35 -2.6 310,822 + AO356_01335 0.47 -1.2 310,822 + AO356_01335 0.47 -1.3 310,823 - AO356_01335 0.47 -1.7 310,910 + AO356_01335 0.61 -1.2 310,911 - AO356_01335 0.61 +1.4 310,911 - AO356_01335 0.61 -0.4 310,911 - AO356_01335 0.61 -1.1 311,305 + AO356_01340 0.25 +0.1 311,305 + AO356_01340 0.25 +0.0 311,305 + AO356_01340 0.25 -0.2 311,305 + AO356_01340 0.25 +0.4 311,305 + AO356_01340 0.25 -0.5 311,306 - AO356_01340 0.26 -0.5 311,329 + AO356_01340 0.29 +0.9 311,329 + AO356_01340 0.29 -1.8 311,330 - AO356_01340 0.29 -3.2 311,330 - AO356_01340 0.29 +0.5 311,330 - AO356_01340 0.29 -0.1 311,330 - AO356_01340 0.29 -1.9 311,451 + AO356_01340 0.48 -0.1 311,452 - AO356_01340 0.48 +0.7 311,452 - AO356_01340 0.48 +2.5 311,496 - AO356_01340 0.54 -0.7 311,496 - AO356_01340 0.54 -1.7 311,519 + AO356_01340 0.58 -1.4 311,519 + AO356_01340 0.58 +1.1 311,519 + AO356_01340 0.58 -0.6 311,532 + AO356_01340 0.60 +1.0 311,533 - AO356_01340 0.60 -0.9 311,994 - AO356_01345 0.13 +1.1 312,124 - AO356_01345 0.21 +1.8
Or see this region's nucleotide sequence