Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1127

Experiment: BHIS with Sulfamonomethoxine 0.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT1125 and BT1126 are separated by 29 nucleotidesBT1126 and BT1127 overlap by 26 nucleotidesBT1127 and BT1128 are separated by 119 nucleotides BT1125: BT1125 - hypothetical protein (NCBI ptt file), at 1,414,451 to 1,415,212 BT1125 BT1126: BT1126 - mobilization protein BmgA (NCBI ptt file), at 1,415,242 to 1,416,192 BT1126 BT1127: BT1127 - mobilization protein BmgB (NCBI ptt file), at 1,416,167 to 1,416,733 BT1127 BT1128: BT1128 - hypothetical protein (NCBI ptt file), at 1,416,853 to 1,417,287 BT1128 Position (kb) 1416 1417Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1415.232 kb on + strandat 1415.236 kb on + strandat 1415.236 kb on + strandat 1415.598 kb on + strand, within BT1126at 1415.619 kb on + strand, within BT1126at 1415.619 kb on + strand, within BT1126at 1415.619 kb on + strand, within BT1126at 1416.186 kb on + strandat 1416.337 kb on + strand, within BT1127at 1416.337 kb on + strand, within BT1127at 1416.337 kb on + strand, within BT1127at 1416.381 kb on + strand, within BT1127at 1416.733 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Sulfamonomethoxine 0.2 mM
remove
1,415,232 + +0.8
1,415,236 + +2.6
1,415,236 + -1.4
1,415,598 + BT1126 0.37 -2.3
1,415,619 + BT1126 0.40 -0.9
1,415,619 + BT1126 0.40 +3.5
1,415,619 + BT1126 0.40 +0.0
1,416,186 + -1.6
1,416,337 + BT1127 0.30 +2.2
1,416,337 + BT1127 0.30 +1.3
1,416,337 + BT1127 0.30 +0.4
1,416,381 + BT1127 0.38 +1.0
1,416,733 + +1.0

Or see this region's nucleotide sequence