Strain Fitness in Sinorhizobium meliloti 1021 around SMc01531

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01532 and SMc01531 are separated by 134 nucleotidesSMc01531 and SMc01530 are separated by 249 nucleotides SMc01532: SMc01532 - alpha-glycosylase, at 2,599,454 to 2,601,097 SMc01532 SMc01531: SMc01531 - 2-dehydro-3-deoxygluconokinase, at 2,601,232 to 2,602,149 SMc01531 SMc01530: SMc01530 - transposase ISRM3, at 2,602,399 to 2,603,595 SMc01530 Position (kb) 2601 2602 2603Strain fitness (log2 ratio) -2 -1 0 1at 2600.295 kb on + strand, within SMc01532at 2600.295 kb on + strand, within SMc01532at 2600.296 kb on - strand, within SMc01532at 2600.296 kb on - strand, within SMc01532at 2600.358 kb on + strand, within SMc01532at 2600.358 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.360 kb on + strand, within SMc01532at 2600.361 kb on - strand, within SMc01532at 2600.361 kb on - strand, within SMc01532at 2600.361 kb on - strandat 2600.361 kb on - strand, within SMc01532at 2600.361 kb on - strand, within SMc01532at 2600.466 kb on + strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.602 kb on - strand, within SMc01532at 2600.703 kb on + strand, within SMc01532at 2600.703 kb on + strand, within SMc01532at 2600.703 kb on + strand, within SMc01532at 2600.704 kb on - strand, within SMc01532at 2600.771 kb on - strand, within SMc01532at 2601.036 kb on + strandat 2601.036 kb on + strandat 2601.037 kb on - strandat 2601.037 kb on - strandat 2601.045 kb on + strandat 2601.135 kb on + strandat 2601.310 kb on + strandat 2601.311 kb on - strandat 2601.340 kb on + strand, within SMc01531at 2601.379 kb on + strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.494 kb on - strand, within SMc01531at 2601.495 kb on + strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2601.496 kb on - strand, within SMc01531at 2602.084 kb on - strandat 2602.167 kb on + strandat 2602.177 kb on - strandat 2602.228 kb on + strandat 2602.228 kb on + strandat 2602.228 kb on + strandat 2602.229 kb on - strandat 2602.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,600,295 + SMc01532 0.51 +0.1
2,600,295 + SMc01532 0.51 -0.2
2,600,296 - SMc01532 0.51 -0.2
2,600,296 - SMc01532 0.51 -1.4
2,600,358 + SMc01532 0.55 +0.5
2,600,358 + SMc01532 0.55 -0.3
2,600,360 + SMc01532 0.55 -0.1
2,600,360 + SMc01532 0.55 +0.6
2,600,360 + SMc01532 0.55 +0.1
2,600,360 + SMc01532 0.55 -0.3
2,600,361 - SMc01532 0.55 +1.1
2,600,361 - SMc01532 0.55 +0.1
2,600,361 - +1.4
2,600,361 - SMc01532 0.55 -0.2
2,600,361 - SMc01532 0.55 -1.1
2,600,466 + SMc01532 0.62 +0.8
2,600,602 - SMc01532 0.70 +0.4
2,600,602 - SMc01532 0.70 -0.2
2,600,602 - SMc01532 0.70 -2.7
2,600,602 - SMc01532 0.70 -0.6
2,600,602 - SMc01532 0.70 +0.4
2,600,703 + SMc01532 0.76 +0.8
2,600,703 + SMc01532 0.76 -1.1
2,600,703 + SMc01532 0.76 +0.4
2,600,704 - SMc01532 0.76 +0.1
2,600,771 - SMc01532 0.80 +0.4
2,601,036 + +0.3
2,601,036 + -0.3
2,601,037 - -2.4
2,601,037 - -1.2
2,601,045 + +0.9
2,601,135 + -0.2
2,601,310 + -0.5
2,601,311 - -0.4
2,601,340 + SMc01531 0.12 -0.9
2,601,379 + SMc01531 0.16 -1.8
2,601,494 - SMc01531 0.29 -0.1
2,601,494 - SMc01531 0.29 -0.7
2,601,494 - SMc01531 0.29 -0.4
2,601,495 + SMc01531 0.29 +0.4
2,601,496 - SMc01531 0.29 -0.2
2,601,496 - SMc01531 0.29 +0.1
2,601,496 - SMc01531 0.29 +0.3
2,602,084 - -0.0
2,602,167 + +0.2
2,602,177 - +0.6
2,602,228 + +0.2
2,602,228 + +0.1
2,602,228 + -0.2
2,602,229 - +1.4
2,602,229 - -0.6

Or see this region's nucleotide sequence