Strain Fitness in Sinorhizobium meliloti 1021 around SMa1427

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1424 and SMa1427 are separated by 74 nucleotidesSMa1427 and SMa1428 are separated by 249 nucleotidesSMa1428 and SMa1430 are separated by 1 nucleotides SMa1424: SMa1424 - ABC transporter permease, at 784,390 to 785,355 SMa1424 SMa1427: SMa1427 - ABC transporter substrate-binding protein, at 785,430 to 786,548 SMa1427 SMa1428: SMa1428 - TetR/AcrR family transcriptional regulator, at 786,798 to 787,457 SMa1428 SMa1430: SMa1430 - Dehydrogenase, Zn-dependent, at 787,459 to 788,475 SMa1430 Position (kb) 785 786 787Strain fitness (log2 ratio) -1 0 1 2at 784.776 kb on - strand, within SMa1424at 784.776 kb on - strand, within SMa1424at 784.776 kb on - strand, within SMa1424at 784.844 kb on + strand, within SMa1424at 784.844 kb on + strand, within SMa1424at 784.844 kb on + strand, within SMa1424at 784.915 kb on + strand, within SMa1424at 785.029 kb on + strand, within SMa1424at 785.029 kb on + strand, within SMa1424at 785.029 kb on + strand, within SMa1424at 785.030 kb on - strand, within SMa1424at 785.030 kb on - strand, within SMa1424at 785.030 kb on - strand, within SMa1424at 785.390 kb on - strandat 785.444 kb on + strandat 785.620 kb on + strand, within SMa1427at 785.726 kb on - strand, within SMa1427at 786.082 kb on + strand, within SMa1427at 786.082 kb on + strand, within SMa1427at 786.082 kb on + strand, within SMa1427at 786.142 kb on + strand, within SMa1427at 786.755 kb on - strandat 786.976 kb on - strand, within SMa1428at 786.982 kb on - strand, within SMa1428at 787.029 kb on + strand, within SMa1428at 787.029 kb on + strand, within SMa1428at 787.029 kb on + strand, within SMa1428at 787.029 kb on + strand, within SMa1428at 787.123 kb on - strandat 787.123 kb on - strand, within SMa1428at 787.125 kb on + strand, within SMa1428at 787.125 kb on + strand, within SMa1428at 787.126 kb on - strand, within SMa1428at 787.335 kb on + strand, within SMa1428at 787.335 kb on + strand, within SMa1428at 787.336 kb on - strand, within SMa1428at 787.336 kb on - strand, within SMa1428at 787.338 kb on + strand, within SMa1428at 787.338 kb on + strand, within SMa1428at 787.339 kb on - strand, within SMa1428at 787.339 kb on - strand, within SMa1428at 787.339 kb on - strand, within SMa1428at 787.339 kb on - strand, within SMa1428at 787.339 kb on - strand, within SMa1428at 787.339 kb on - strand, within SMa1428at 787.426 kb on + strandat 787.426 kb on + strandat 787.427 kb on - strandat 787.427 kb on - strandat 787.427 kb on - strandat 787.427 kb on - strandat 787.523 kb on + strandat 787.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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784,776 - SMa1424 0.40 +0.1
784,776 - SMa1424 0.40 +0.0
784,776 - SMa1424 0.40 +1.2
784,844 + SMa1424 0.47 +0.2
784,844 + SMa1424 0.47 -0.3
784,844 + SMa1424 0.47 +0.4
784,915 + SMa1424 0.54 +0.3
785,029 + SMa1424 0.66 +0.5
785,029 + SMa1424 0.66 -0.3
785,029 + SMa1424 0.66 +0.4
785,030 - SMa1424 0.66 -0.3
785,030 - SMa1424 0.66 -0.5
785,030 - SMa1424 0.66 -0.3
785,390 - +0.5
785,444 + -0.3
785,620 + SMa1427 0.17 -0.7
785,726 - SMa1427 0.26 -0.0
786,082 + SMa1427 0.58 -0.2
786,082 + SMa1427 0.58 -0.5
786,082 + SMa1427 0.58 -1.7
786,142 + SMa1427 0.64 -0.7
786,755 - +1.3
786,976 - SMa1428 0.27 -0.8
786,982 - SMa1428 0.28 +0.6
787,029 + SMa1428 0.35 +2.1
787,029 + SMa1428 0.35 -1.3
787,029 + SMa1428 0.35 +0.5
787,029 + SMa1428 0.35 -0.2
787,123 - -0.5
787,123 - SMa1428 0.49 +0.8
787,125 + SMa1428 0.50 -1.0
787,125 + SMa1428 0.50 +0.6
787,126 - SMa1428 0.50 -0.4
787,335 + SMa1428 0.81 -0.3
787,335 + SMa1428 0.81 +0.3
787,336 - SMa1428 0.82 +0.7
787,336 - SMa1428 0.82 -0.8
787,338 + SMa1428 0.82 +1.0
787,338 + SMa1428 0.82 +1.2
787,339 - SMa1428 0.82 +1.3
787,339 - SMa1428 0.82 -0.0
787,339 - SMa1428 0.82 +0.4
787,339 - SMa1428 0.82 +0.1
787,339 - SMa1428 0.82 +0.4
787,339 - SMa1428 0.82 -0.2
787,426 + +0.6
787,426 + -0.1
787,427 - +0.9
787,427 - +0.5
787,427 - +0.6
787,427 - +0.9
787,523 + +0.6
787,524 + -0.1

Or see this region's nucleotide sequence