Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20609 and SM_b20610 overlap by 14 nucleotides SM_b20610 and SM_b20611 are separated by 112 nucleotides
SM_b20609: SM_b20609 - two-component sensor histidine kinase, at 1,622,168 to 1,625,548
_b20609
SM_b20610: SM_b20610 - two-component response regulator protein, at 1,625,535 to 1,626,464
_b20610
SM_b20611: SM_b20611 - C4-dicarboxylate transporter DctA, at 1,626,577 to 1,627,902
_b20611
Position (kb)
1625
1626
1627 Strain fitness (log2 ratio)
-1
0
1 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.606 kb on + strand, within SM_b20609 at 1624.730 kb on + strand, within SM_b20609 at 1624.900 kb on + strand, within SM_b20609 at 1624.901 kb on - strand, within SM_b20609 at 1624.910 kb on + strand, within SM_b20609 at 1625.050 kb on + strand, within SM_b20609 at 1625.050 kb on + strand, within SM_b20609 at 1625.050 kb on + strand, within SM_b20609 at 1625.051 kb on - strand, within SM_b20609 at 1625.283 kb on - strand at 1625.468 kb on + strand at 1625.468 kb on + strand at 1625.468 kb on + strand at 1625.572 kb on + strand at 1625.572 kb on + strand at 1625.573 kb on - strand at 1625.573 kb on - strand at 1625.573 kb on - strand at 1625.644 kb on + strand, within SM_b20610 at 1625.882 kb on + strand, within SM_b20610 at 1626.184 kb on - strand, within SM_b20610 at 1626.184 kb on - strand, within SM_b20610 at 1626.184 kb on - strand, within SM_b20610 at 1626.210 kb on + strand, within SM_b20610 at 1626.210 kb on + strand, within SM_b20610 at 1626.210 kb on + strand, within SM_b20610 at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.393 kb on + strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.394 kb on - strand at 1626.579 kb on - strand at 1626.896 kb on + strand, within SM_b20611 at 1626.950 kb on + strand, within SM_b20611 at 1626.950 kb on + strand, within SM_b20611 at 1626.950 kb on + strand, within SM_b20611 at 1626.951 kb on - strand, within SM_b20611 at 1626.951 kb on - strand, within SM_b20611 at 1626.951 kb on - strand, within SM_b20611 at 1626.954 kb on + strand, within SM_b20611 at 1626.954 kb on + strand, within SM_b20611 at 1626.954 kb on + strand, within SM_b20611 at 1626.954 kb on + strand, within SM_b20611 at 1626.955 kb on - strand, within SM_b20611 at 1627.109 kb on + strand, within SM_b20611 at 1627.142 kb on + strand, within SM_b20611 at 1627.142 kb on + strand, within SM_b20611 at 1627.194 kb on - strand, within SM_b20611 at 1627.241 kb on + strand, within SM_b20611 at 1627.241 kb on + strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611 at 1627.242 kb on - strand, within SM_b20611
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,624,606 + SM_b20609 0.72 +0.2 1,624,606 + SM_b20609 0.72 -0.5 1,624,606 + SM_b20609 0.72 -0.4 1,624,606 + SM_b20609 0.72 -0.2 1,624,606 + SM_b20609 0.72 -1.1 1,624,730 + SM_b20609 0.76 +0.1 1,624,900 + SM_b20609 0.81 +1.1 1,624,901 - SM_b20609 0.81 -0.3 1,624,910 + SM_b20609 0.81 -0.7 1,625,050 + SM_b20609 0.85 +0.3 1,625,050 + SM_b20609 0.85 -0.7 1,625,050 + SM_b20609 0.85 +0.4 1,625,051 - SM_b20609 0.85 -0.6 1,625,283 - +0.1 1,625,468 + -0.3 1,625,468 + +0.2 1,625,468 + +1.6 1,625,572 + +0.6 1,625,572 + +0.3 1,625,573 - -0.0 1,625,573 - +0.4 1,625,573 - -0.6 1,625,644 + SM_b20610 0.12 -0.7 1,625,882 + SM_b20610 0.37 -0.4 1,626,184 - SM_b20610 0.70 -0.3 1,626,184 - SM_b20610 0.70 +0.1 1,626,184 - SM_b20610 0.70 -0.2 1,626,210 + SM_b20610 0.73 -0.6 1,626,210 + SM_b20610 0.73 -0.7 1,626,210 + SM_b20610 0.73 -0.4 1,626,393 + -0.5 1,626,393 + +0.1 1,626,393 + +0.5 1,626,393 + -0.6 1,626,393 + -0.3 1,626,393 + +0.3 1,626,393 + -0.1 1,626,393 + +0.6 1,626,393 + +0.2 1,626,393 + +0.5 1,626,393 + -0.7 1,626,393 + +0.2 1,626,394 - +0.1 1,626,394 - -0.3 1,626,394 - -0.4 1,626,394 - -1.3 1,626,394 - -0.5 1,626,579 - +0.2 1,626,896 + SM_b20611 0.24 +0.3 1,626,950 + SM_b20611 0.28 +0.6 1,626,950 + SM_b20611 0.28 -0.7 1,626,950 + SM_b20611 0.28 +0.8 1,626,951 - SM_b20611 0.28 +0.5 1,626,951 - SM_b20611 0.28 +0.7 1,626,951 - SM_b20611 0.28 -0.5 1,626,954 + SM_b20611 0.28 +0.0 1,626,954 + SM_b20611 0.28 +0.5 1,626,954 + SM_b20611 0.28 +0.4 1,626,954 + SM_b20611 0.28 -0.5 1,626,955 - SM_b20611 0.29 -0.1 1,627,109 + SM_b20611 0.40 -0.1 1,627,142 + SM_b20611 0.43 -0.9 1,627,142 + SM_b20611 0.43 +1.3 1,627,194 - SM_b20611 0.47 +0.0 1,627,241 + SM_b20611 0.50 -0.3 1,627,241 + SM_b20611 0.50 +1.7 1,627,242 - SM_b20611 0.50 +0.4 1,627,242 - SM_b20611 0.50 -0.1 1,627,242 - SM_b20611 0.50 +0.2 1,627,242 - SM_b20611 0.50 -0.1 1,627,242 - SM_b20611 0.50 +0.9 1,627,242 - SM_b20611 0.50 -0.6
Or see this region's nucleotide sequence