Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20059

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20057 and SM_b20058 overlap by 4 nucleotidesSM_b20058 and SM_b20059 are separated by 3 nucleotidesSM_b20059 and SM_b20060 are separated by 91 nucleotides SM_b20057: SM_b20057 - ABC transporter permease, at 67,708 to 68,751 _b20057 SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548 _b20058 SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331 _b20059 SM_b20060: SM_b20060 - ISRm5 transposase, at 70,423 to 71,619 _b20060 Position (kb) 69 70 71Strain fitness (log2 ratio) -1 0 1at 68.723 kb on + strandat 69.594 kb on + strandat 69.595 kb on - strandat 69.857 kb on - strand, within SM_b20059at 69.897 kb on + strand, within SM_b20059at 69.897 kb on + strand, within SM_b20059at 69.898 kb on - strand, within SM_b20059at 69.898 kb on - strand, within SM_b20059at 69.898 kb on - strand, within SM_b20059at 70.096 kb on - strand, within SM_b20059at 70.210 kb on + strand, within SM_b20059at 70.210 kb on + strand, within SM_b20059at 70.210 kb on + strand, within SM_b20059at 70.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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68,723 + +0.7
69,594 + -0.0
69,595 - +0.0
69,857 - SM_b20059 0.39 +0.3
69,897 + SM_b20059 0.44 +0.5
69,897 + SM_b20059 0.44 -0.6
69,898 - SM_b20059 0.44 -0.6
69,898 - SM_b20059 0.44 -1.1
69,898 - SM_b20059 0.44 -0.9
70,096 - SM_b20059 0.70 -0.4
70,210 + SM_b20059 0.84 -1.0
70,210 + SM_b20059 0.84 -1.0
70,210 + SM_b20059 0.84 -1.1
70,330 - -0.1

Or see this region's nucleotide sequence