Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4791

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4790 and Psyr_4791 are separated by 22 nucleotidesPsyr_4791 and Psyr_4792 are separated by 83 nucleotides Psyr_4790: Psyr_4790 - phosphoglycerate kinase, at 5,677,155 to 5,678,318 _4790 Psyr_4791: Psyr_4791 - D-erythrose-4-phosphate dehydrogenase, at 5,678,341 to 5,679,384 _4791 Psyr_4792: Psyr_4792 - transketolase, at 5,679,468 to 5,681,465 _4792 Position (kb) 5678 5679 5680Strain fitness (log2 ratio) -2 -1 0 1 2at 5677.384 kb on - strand, within Psyr_4790at 5678.623 kb on - strand, within Psyr_4791at 5678.623 kb on - strand, within Psyr_4791at 5679.174 kb on - strand, within Psyr_4791at 5679.366 kb on - strandat 5679.366 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strandat 5679.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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5,677,384 - Psyr_4790 0.20 +0.2
5,678,623 - Psyr_4791 0.27 +1.4
5,678,623 - Psyr_4791 0.27 -0.4
5,679,174 - Psyr_4791 0.80 -2.0
5,679,366 - +0.1
5,679,366 - +1.3
5,679,462 - -1.8
5,679,462 - -0.2
5,679,462 - +0.9
5,679,462 - +2.7
5,679,462 - +0.3
5,679,462 - -1.1
5,679,462 - -1.0
5,679,462 - +0.5
5,679,462 - -1.0

Or see this region's nucleotide sequence