Experiment: KB with Avocadyne 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4281 and Psyr_4282 are separated by 3 nucleotides Psyr_4282 and Psyr_4283 are separated by 474 nucleotides
Psyr_4281: Psyr_4281 - cytochrome bd quinol oxidase subunit 2 apoprotein, at 5,104,595 to 5,105,602
_4281
Psyr_4282: Psyr_4282 - cytochrome bd quinol oxidase subunit 1 apoprotein, at 5,105,606 to 5,107,045
_4282
Psyr_4283: Psyr_4283 - xanthine dehydrogenase, molybdenum binding subunit apoprotein, at 5,107,520 to 5,109,721
_4283
Position (kb) 5105
5106
5107
5108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.820 kb on + strand, within Psyr_4281 at 5104.820 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.352 kb on + strand, within Psyr_4281 at 5105.377 kb on - strand, within Psyr_4281 at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.607 kb on + strand at 5105.607 kb on + strand at 5105.607 kb on + strand at 5105.608 kb on - strand at 5105.728 kb on - strand at 5105.728 kb on - strand at 5105.728 kb on - strand at 5105.728 kb on - strand at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.763 kb on + strand, within Psyr_4282 at 5105.764 kb on - strand, within Psyr_4282 at 5105.764 kb on - strand, within Psyr_4282 at 5105.764 kb on - strand, within Psyr_4282 at 5105.794 kb on - strand, within Psyr_4282 at 5105.877 kb on + strand, within Psyr_4282 at 5105.967 kb on + strand, within Psyr_4282 at 5105.968 kb on - strand, within Psyr_4282 at 5105.989 kb on - strand, within Psyr_4282 at 5106.094 kb on + strand, within Psyr_4282 at 5106.095 kb on - strand, within Psyr_4282 at 5106.192 kb on + strand, within Psyr_4282 at 5106.193 kb on - strand, within Psyr_4282 at 5106.193 kb on - strand, within Psyr_4282 at 5106.199 kb on + strand, within Psyr_4282 at 5106.200 kb on - strand, within Psyr_4282 at 5106.200 kb on - strand, within Psyr_4282 at 5106.747 kb on + strand, within Psyr_4282 at 5106.747 kb on + strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.748 kb on - strand, within Psyr_4282 at 5106.885 kb on + strand, within Psyr_4282 at 5106.885 kb on + strand, within Psyr_4282 at 5106.886 kb on - strand, within Psyr_4282 at 5106.897 kb on + strand, within Psyr_4282 at 5106.945 kb on + strand at 5106.945 kb on + strand at 5106.946 kb on - strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.025 kb on + strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.026 kb on - strand at 5107.028 kb on - strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.045 kb on + strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.046 kb on - strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.121 kb on + strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.122 kb on - strand at 5107.131 kb on + strand at 5107.195 kb on + strand at 5107.196 kb on - strand at 5107.196 kb on - strand at 5107.196 kb on - strand at 5107.237 kb on + strand at 5107.252 kb on + strand at 5107.298 kb on + strand at 5107.378 kb on + strand at 5107.531 kb on + strand at 5107.558 kb on + strand at 5107.578 kb on + strand at 5107.578 kb on + strand at 5107.578 kb on + strand at 5107.579 kb on - strand at 5107.579 kb on - strand at 5107.579 kb on - strand at 5107.579 kb on - strand at 5107.945 kb on + strand, within Psyr_4283 at 5107.945 kb on + strand, within Psyr_4283 at 5107.946 kb on - strand, within Psyr_4283 at 5107.956 kb on + strand, within Psyr_4283
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM remove 5,104,638 + +1.2 5,104,638 + -2.0 5,104,638 + -0.7 5,104,638 + +0.8 5,104,638 + -3.0 5,104,638 + -0.2 5,104,638 + -1.1 5,104,638 + -0.6 5,104,639 - -0.6 5,104,639 - -1.4 5,104,639 - -0.8 5,104,639 - -0.0 5,104,639 - +0.5 5,104,639 - -0.4 5,104,639 - -2.3 5,104,639 - +0.7 5,104,641 + -0.2 5,104,641 + +0.2 5,104,641 + -0.5 5,104,641 + -0.1 5,104,641 + -0.3 5,104,641 + -0.4 5,104,642 - -0.7 5,104,642 - -2.0 5,104,642 - -1.0 5,104,820 + Psyr_4281 0.22 -0.9 5,104,820 + Psyr_4281 0.22 -0.3 5,104,869 + Psyr_4281 0.27 -0.0 5,104,869 + Psyr_4281 0.27 +0.5 5,104,869 + Psyr_4281 0.27 -1.4 5,104,869 + Psyr_4281 0.27 -1.1 5,104,869 + Psyr_4281 0.27 +0.2 5,104,869 + Psyr_4281 0.27 -1.4 5,104,869 + Psyr_4281 0.27 +1.0 5,104,869 + Psyr_4281 0.27 -0.0 5,104,869 + Psyr_4281 0.27 -0.5 5,104,869 + Psyr_4281 0.27 +0.2 5,104,869 + Psyr_4281 0.27 +0.1 5,104,869 + Psyr_4281 0.27 +1.2 5,104,869 + Psyr_4281 0.27 +1.8 5,104,869 + Psyr_4281 0.27 -0.9 5,104,869 + Psyr_4281 0.27 -2.1 5,104,869 + Psyr_4281 0.27 +0.0 5,104,870 - Psyr_4281 0.27 +2.6 5,104,870 - Psyr_4281 0.27 -0.7 5,104,870 - Psyr_4281 0.27 -2.0 5,104,870 - Psyr_4281 0.27 -0.3 5,104,870 - Psyr_4281 0.27 +0.1 5,104,870 - Psyr_4281 0.27 -1.3 5,104,870 - Psyr_4281 0.27 +0.8 5,104,870 - Psyr_4281 0.27 -2.0 5,104,870 - Psyr_4281 0.27 +0.4 5,104,870 - Psyr_4281 0.27 -1.1 5,104,870 - Psyr_4281 0.27 +1.2 5,104,870 - Psyr_4281 0.27 -1.3 5,104,870 - Psyr_4281 0.27 +0.6 5,104,870 - Psyr_4281 0.27 -1.7 5,104,870 - Psyr_4281 0.27 +0.3 5,104,870 - Psyr_4281 0.27 -1.0 5,104,870 - Psyr_4281 0.27 -0.5 5,104,870 - Psyr_4281 0.27 +0.1 5,104,870 - Psyr_4281 0.27 -1.5 5,104,870 - Psyr_4281 0.27 -1.8 5,104,870 - Psyr_4281 0.27 -3.0 5,104,870 - Psyr_4281 0.27 -1.9 5,104,870 - Psyr_4281 0.27 -1.6 5,104,870 - Psyr_4281 0.27 -2.6 5,104,870 - Psyr_4281 0.27 +1.2 5,104,870 - Psyr_4281 0.27 -0.5 5,104,870 - Psyr_4281 0.27 +0.5 5,105,193 + Psyr_4281 0.59 -0.8 5,105,193 + Psyr_4281 0.59 +0.1 5,105,193 + Psyr_4281 0.59 -1.7 5,105,193 + Psyr_4281 0.59 +0.6 5,105,193 + Psyr_4281 0.59 -0.0 5,105,193 + Psyr_4281 0.59 -0.3 5,105,193 + Psyr_4281 0.59 -0.8 5,105,193 + Psyr_4281 0.59 -1.8 5,105,193 + Psyr_4281 0.59 -0.8 5,105,193 + Psyr_4281 0.59 +0.4 5,105,193 + Psyr_4281 0.59 -0.7 5,105,193 + Psyr_4281 0.59 -3.2 5,105,193 + Psyr_4281 0.59 -0.0 5,105,194 - Psyr_4281 0.59 +1.4 5,105,194 - Psyr_4281 0.59 -0.5 5,105,194 - Psyr_4281 0.59 +0.9 5,105,194 - Psyr_4281 0.59 -1.5 5,105,194 - Psyr_4281 0.59 +2.2 5,105,194 - Psyr_4281 0.59 +1.0 5,105,194 - Psyr_4281 0.59 -1.8 5,105,194 - Psyr_4281 0.59 -1.6 5,105,194 - Psyr_4281 0.59 -2.0 5,105,194 - Psyr_4281 0.59 +1.0 5,105,194 - Psyr_4281 0.59 +0.9 5,105,352 + Psyr_4281 0.75 -0.3 5,105,377 - Psyr_4281 0.78 -2.3 5,105,544 + -1.9 5,105,544 + -1.3 5,105,544 + -0.4 5,105,544 + -1.5 5,105,544 + +0.8 5,105,544 + -0.1 5,105,544 + -0.7 5,105,544 + -0.9 5,105,544 + -2.0 5,105,545 - -1.4 5,105,545 - -1.0 5,105,545 - -1.1 5,105,545 - +0.8 5,105,545 - -0.3 5,105,545 - -1.8 5,105,545 - +0.7 5,105,545 - +0.2 5,105,545 - +0.2 5,105,545 - +0.3 5,105,545 - -0.4 5,105,545 - -3.1 5,105,545 - -0.7 5,105,545 - -0.7 5,105,607 + +0.4 5,105,607 + -2.2 5,105,607 + -1.2 5,105,608 - -0.5 5,105,728 - +1.6 5,105,728 - +0.2 5,105,728 - +1.2 5,105,728 - +0.9 5,105,763 + Psyr_4282 0.11 -0.4 5,105,763 + Psyr_4282 0.11 +1.2 5,105,763 + Psyr_4282 0.11 -1.5 5,105,763 + Psyr_4282 0.11 +1.2 5,105,763 + Psyr_4282 0.11 -0.7 5,105,764 - Psyr_4282 0.11 -0.1 5,105,764 - Psyr_4282 0.11 -0.3 5,105,764 - Psyr_4282 0.11 -1.1 5,105,794 - Psyr_4282 0.13 -1.7 5,105,877 + Psyr_4282 0.19 -3.4 5,105,967 + Psyr_4282 0.25 -1.8 5,105,968 - Psyr_4282 0.25 -1.1 5,105,989 - Psyr_4282 0.27 -0.4 5,106,094 + Psyr_4282 0.34 -0.6 5,106,095 - Psyr_4282 0.34 +0.2 5,106,192 + Psyr_4282 0.41 -2.5 5,106,193 - Psyr_4282 0.41 -0.4 5,106,193 - Psyr_4282 0.41 -1.3 5,106,199 + Psyr_4282 0.41 +0.5 5,106,200 - Psyr_4282 0.41 -0.4 5,106,200 - Psyr_4282 0.41 +0.2 5,106,747 + Psyr_4282 0.79 -1.0 5,106,747 + Psyr_4282 0.79 -2.2 5,106,748 - Psyr_4282 0.79 -0.2 5,106,748 - Psyr_4282 0.79 +0.8 5,106,748 - Psyr_4282 0.79 +2.0 5,106,748 - Psyr_4282 0.79 -0.4 5,106,885 + Psyr_4282 0.89 -1.8 5,106,885 + Psyr_4282 0.89 -0.9 5,106,886 - Psyr_4282 0.89 -0.2 5,106,897 + Psyr_4282 0.90 -0.6 5,106,945 + -1.3 5,106,945 + -0.5 5,106,946 - -1.4 5,107,025 + -3.0 5,107,025 + -0.4 5,107,025 + -1.3 5,107,025 + -1.8 5,107,025 + -0.5 5,107,025 + -1.6 5,107,025 + +1.2 5,107,025 + -2.2 5,107,025 + -0.7 5,107,025 + -0.8 5,107,025 + -1.0 5,107,025 + -1.1 5,107,025 + -1.6 5,107,025 + -2.4 5,107,025 + -0.9 5,107,025 + +0.2 5,107,025 + +1.5 5,107,025 + -0.1 5,107,025 + -1.8 5,107,025 + -1.2 5,107,026 - -0.1 5,107,026 - -1.4 5,107,026 - +1.2 5,107,026 - -1.1 5,107,026 - -1.6 5,107,026 - -1.4 5,107,026 - -0.6 5,107,026 - -0.5 5,107,026 - -0.8 5,107,026 - -1.4 5,107,026 - -0.4 5,107,026 - -0.5 5,107,028 - +0.1 5,107,045 + -0.1 5,107,045 + -0.4 5,107,045 + +1.2 5,107,045 + -0.7 5,107,045 + -0.7 5,107,045 + -1.3 5,107,045 + -1.5 5,107,045 + -0.8 5,107,045 + +0.3 5,107,045 + -0.8 5,107,045 + -0.8 5,107,045 + +1.7 5,107,045 + -1.4 5,107,045 + -0.3 5,107,045 + -0.4 5,107,045 + -0.2 5,107,045 + -0.9 5,107,046 - -0.2 5,107,046 - -0.7 5,107,046 - -2.2 5,107,046 - -0.9 5,107,046 - -0.1 5,107,046 - -0.8 5,107,046 - +0.2 5,107,046 - -2.7 5,107,046 - -0.7 5,107,046 - -1.1 5,107,046 - +1.2 5,107,046 - -0.3 5,107,121 + -1.7 5,107,121 + -0.9 5,107,121 + -1.1 5,107,121 + -2.4 5,107,121 + +1.6 5,107,121 + -0.4 5,107,122 - +1.2 5,107,122 - +0.1 5,107,122 - +1.2 5,107,122 - +0.2 5,107,122 - -0.7 5,107,122 - -0.3 5,107,122 - -0.5 5,107,131 + +0.7 5,107,195 + +4.2 5,107,196 - -0.0 5,107,196 - -0.5 5,107,196 - -0.4 5,107,237 + +0.6 5,107,252 + +0.5 5,107,298 + +1.2 5,107,378 + +0.5 5,107,531 + -1.1 5,107,558 + +0.1 5,107,578 + -1.1 5,107,578 + -0.6 5,107,578 + -1.4 5,107,579 - +0.2 5,107,579 - +1.0 5,107,579 - -0.4 5,107,579 - -0.2 5,107,945 + Psyr_4283 0.19 +0.5 5,107,945 + Psyr_4283 0.19 +1.7 5,107,946 - Psyr_4283 0.19 -0.2 5,107,956 + Psyr_4283 0.20 -0.8
Or see this region's nucleotide sequence