Experiment: KB with Avocadyne 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4229 and Psyr_4230 are separated by 89 nucleotides Psyr_4230 and Psyr_4231 overlap by 4 nucleotides Psyr_4231 and Psyr_4232 are separated by 192 nucleotides
Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229
_4229
Psyr_4230: Psyr_4230 - Helix-turn-helix, Fis-type, at 5,038,319 to 5,038,882
_4230
Psyr_4231: Psyr_4231 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,038,879 to 5,040,138
_4231
Psyr_4232: Psyr_4232 - Protein of unknown function DUF541, at 5,040,331 to 5,041,044
_4232
Position (kb) 5038
5039
5040
5041 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5037.928 kb on + strand, within Psyr_4229 at 5037.929 kb on - strand, within Psyr_4229 at 5037.929 kb on - strand, within Psyr_4229 at 5037.979 kb on + strand, within Psyr_4229 at 5037.979 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.194 kb on - strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.304 kb on - strand at 5038.399 kb on + strand, within Psyr_4230 at 5038.399 kb on + strand, within Psyr_4230 at 5038.399 kb on + strand, within Psyr_4230 at 5038.399 kb on + strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.432 kb on + strand, within Psyr_4230 at 5038.433 kb on - strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.521 kb on - strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.704 kb on + strand, within Psyr_4230 at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.827 kb on - strand at 5038.827 kb on - strand at 5038.949 kb on + strand at 5038.950 kb on - strand at 5039.028 kb on + strand, within Psyr_4231 at 5039.029 kb on - strand, within Psyr_4231 at 5039.031 kb on + strand, within Psyr_4231 at 5039.242 kb on - strand, within Psyr_4231 at 5039.242 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.244 kb on - strand, within Psyr_4231 at 5039.253 kb on - strand, within Psyr_4231 at 5039.334 kb on + strand, within Psyr_4231 at 5039.334 kb on + strand, within Psyr_4231 at 5039.335 kb on - strand, within Psyr_4231 at 5039.335 kb on - strand, within Psyr_4231 at 5039.669 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.738 kb on + strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.739 kb on - strand, within Psyr_4231 at 5039.774 kb on + strand at 5039.819 kb on + strand, within Psyr_4231 at 5039.819 kb on + strand, within Psyr_4231 at 5039.819 kb on + strand, within Psyr_4231 at 5039.820 kb on - strand, within Psyr_4231 at 5039.823 kb on - strand, within Psyr_4231 at 5039.858 kb on + strand, within Psyr_4231 at 5039.858 kb on + strand, within Psyr_4231 at 5039.858 kb on + strand, within Psyr_4231 at 5039.859 kb on - strand, within Psyr_4231 at 5039.859 kb on - strand, within Psyr_4231 at 5039.859 kb on - strand, within Psyr_4231 at 5040.178 kb on + strand at 5040.178 kb on + strand at 5040.178 kb on + strand at 5040.178 kb on + strand at 5040.178 kb on + strand at 5040.178 kb on + strand at 5040.178 kb on + strand at 5040.179 kb on - strand at 5040.179 kb on - strand at 5040.179 kb on - strand at 5040.179 kb on - strand at 5040.268 kb on - strand at 5040.484 kb on + strand, within Psyr_4232 at 5040.485 kb on - strand, within Psyr_4232 at 5040.485 kb on - strand, within Psyr_4232 at 5040.619 kb on + strand, within Psyr_4232 at 5040.619 kb on + strand, within Psyr_4232 at 5040.859 kb on - strand, within Psyr_4232 at 5040.865 kb on + strand, within Psyr_4232 at 5040.866 kb on - strand, within Psyr_4232 at 5040.866 kb on - strand, within Psyr_4232 at 5040.891 kb on + strand, within Psyr_4232 at 5040.891 kb on + strand, within Psyr_4232 at 5040.892 kb on - strand, within Psyr_4232 at 5040.913 kb on + strand, within Psyr_4232 at 5040.913 kb on + strand, within Psyr_4232 at 5040.913 kb on + strand, within Psyr_4232 at 5041.022 kb on + strand at 5041.022 kb on + strand at 5041.023 kb on - strand at 5041.023 kb on - strand at 5041.057 kb on + strand at 5041.057 kb on + strand at 5041.061 kb on - strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.126 kb on - strand at 5041.126 kb on - strand at 5041.126 kb on - strand at 5041.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM remove 5,037,928 + Psyr_4229 0.82 -0.2 5,037,929 - Psyr_4229 0.82 -0.3 5,037,929 - Psyr_4229 0.82 +2.7 5,037,979 + Psyr_4229 0.85 -1.5 5,037,979 + Psyr_4229 0.85 -0.1 5,038,030 + Psyr_4229 0.88 -0.1 5,038,030 + Psyr_4229 0.88 +0.9 5,038,030 + Psyr_4229 0.88 +0.2 5,038,031 - Psyr_4229 0.88 +1.2 5,038,031 - Psyr_4229 0.88 -0.9 5,038,031 - Psyr_4229 0.88 +0.9 5,038,194 - -0.6 5,038,257 + -1.3 5,038,257 + +0.2 5,038,257 + -0.3 5,038,257 + -0.6 5,038,257 + -0.6 5,038,257 + -1.9 5,038,258 - +1.3 5,038,258 - -1.7 5,038,258 - -1.4 5,038,304 - -0.3 5,038,399 + Psyr_4230 0.14 +0.0 5,038,399 + Psyr_4230 0.14 -1.2 5,038,399 + Psyr_4230 0.14 -0.1 5,038,399 + Psyr_4230 0.14 -1.3 5,038,400 - Psyr_4230 0.14 -1.3 5,038,400 - Psyr_4230 0.14 -0.3 5,038,400 - Psyr_4230 0.14 -1.5 5,038,432 + Psyr_4230 0.20 -2.5 5,038,433 - Psyr_4230 0.20 -1.2 5,038,520 + Psyr_4230 0.36 -0.9 5,038,520 + Psyr_4230 0.36 -0.1 5,038,520 + Psyr_4230 0.36 +0.5 5,038,520 + Psyr_4230 0.36 -1.6 5,038,520 + Psyr_4230 0.36 -0.8 5,038,521 - Psyr_4230 0.36 -1.4 5,038,551 + Psyr_4230 0.41 -0.8 5,038,551 + Psyr_4230 0.41 -1.9 5,038,551 + Psyr_4230 0.41 -0.8 5,038,551 + Psyr_4230 0.41 -2.4 5,038,551 + Psyr_4230 0.41 -0.6 5,038,552 - Psyr_4230 0.41 -0.3 5,038,552 - Psyr_4230 0.41 -2.7 5,038,552 - Psyr_4230 0.41 -0.7 5,038,552 - Psyr_4230 0.41 -1.2 5,038,552 - Psyr_4230 0.41 -1.4 5,038,552 - Psyr_4230 0.41 -1.4 5,038,704 + Psyr_4230 0.68 -1.8 5,038,826 + -1.3 5,038,826 + -1.2 5,038,826 + -1.8 5,038,827 - +0.2 5,038,827 - -1.0 5,038,949 + -2.8 5,038,950 - -0.6 5,039,028 + Psyr_4231 0.12 +0.5 5,039,029 - Psyr_4231 0.12 -0.6 5,039,031 + Psyr_4231 0.12 +1.2 5,039,242 - Psyr_4231 0.29 -1.2 5,039,242 - Psyr_4231 0.29 -0.5 5,039,244 - Psyr_4231 0.29 -2.7 5,039,244 - Psyr_4231 0.29 -0.8 5,039,244 - Psyr_4231 0.29 -0.4 5,039,244 - Psyr_4231 0.29 -1.6 5,039,244 - Psyr_4231 0.29 -1.8 5,039,244 - Psyr_4231 0.29 -1.0 5,039,244 - Psyr_4231 0.29 -0.2 5,039,244 - Psyr_4231 0.29 +1.0 5,039,253 - Psyr_4231 0.30 -1.7 5,039,334 + Psyr_4231 0.36 -2.7 5,039,334 + Psyr_4231 0.36 +0.5 5,039,335 - Psyr_4231 0.36 -1.8 5,039,335 - Psyr_4231 0.36 -0.7 5,039,669 + Psyr_4231 0.63 -0.3 5,039,738 + Psyr_4231 0.68 -1.2 5,039,738 + Psyr_4231 0.68 +0.2 5,039,738 + Psyr_4231 0.68 -1.9 5,039,738 + Psyr_4231 0.68 -0.2 5,039,738 + Psyr_4231 0.68 -0.0 5,039,738 + Psyr_4231 0.68 -1.0 5,039,738 + Psyr_4231 0.68 +0.6 5,039,738 + Psyr_4231 0.68 -1.5 5,039,739 - Psyr_4231 0.68 -0.4 5,039,739 - Psyr_4231 0.68 +2.2 5,039,739 - Psyr_4231 0.68 -0.5 5,039,739 - Psyr_4231 0.68 -1.4 5,039,739 - Psyr_4231 0.68 -0.8 5,039,739 - -1.6 5,039,739 - Psyr_4231 0.68 -1.4 5,039,739 - Psyr_4231 0.68 -1.6 5,039,739 - Psyr_4231 0.68 -0.6 5,039,739 - Psyr_4231 0.68 -2.4 5,039,739 - Psyr_4231 0.68 -2.5 5,039,739 - Psyr_4231 0.68 -1.1 5,039,739 - Psyr_4231 0.68 -2.2 5,039,739 - Psyr_4231 0.68 -3.3 5,039,739 - Psyr_4231 0.68 -1.2 5,039,774 + +2.2 5,039,819 + Psyr_4231 0.75 -1.1 5,039,819 + Psyr_4231 0.75 -1.3 5,039,819 + Psyr_4231 0.75 -1.6 5,039,820 - Psyr_4231 0.75 -1.4 5,039,823 - Psyr_4231 0.75 -2.0 5,039,858 + Psyr_4231 0.78 -0.7 5,039,858 + Psyr_4231 0.78 -1.8 5,039,858 + Psyr_4231 0.78 -1.4 5,039,859 - Psyr_4231 0.78 -2.3 5,039,859 - Psyr_4231 0.78 +1.2 5,039,859 - Psyr_4231 0.78 -0.7 5,040,178 + -2.8 5,040,178 + -0.9 5,040,178 + +0.8 5,040,178 + +1.7 5,040,178 + +0.7 5,040,178 + +0.3 5,040,178 + -0.6 5,040,179 - -2.0 5,040,179 - -0.7 5,040,179 - -1.6 5,040,179 - -1.9 5,040,268 - -0.4 5,040,484 + Psyr_4232 0.21 +0.9 5,040,485 - Psyr_4232 0.22 -1.8 5,040,485 - Psyr_4232 0.22 +1.0 5,040,619 + Psyr_4232 0.40 +0.4 5,040,619 + Psyr_4232 0.40 -1.0 5,040,859 - Psyr_4232 0.74 +0.3 5,040,865 + Psyr_4232 0.75 +0.5 5,040,866 - Psyr_4232 0.75 +0.7 5,040,866 - Psyr_4232 0.75 +0.8 5,040,891 + Psyr_4232 0.78 +0.6 5,040,891 + Psyr_4232 0.78 -0.1 5,040,892 - Psyr_4232 0.79 +1.0 5,040,913 + Psyr_4232 0.82 +1.2 5,040,913 + Psyr_4232 0.82 +0.9 5,040,913 + Psyr_4232 0.82 -0.5 5,041,022 + +1.6 5,041,022 + +0.1 5,041,023 - -0.8 5,041,023 - -1.2 5,041,057 + -1.7 5,041,057 + -0.1 5,041,061 - +0.0 5,041,125 + +0.2 5,041,125 + +1.1 5,041,125 + +0.3 5,041,125 + +0.0 5,041,125 + +1.2 5,041,125 + +1.5 5,041,125 + -0.2 5,041,126 - +0.4 5,041,126 - -0.8 5,041,126 - +3.0 5,041,126 - -1.4
Or see this region's nucleotide sequence