Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4230

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4229 and Psyr_4230 are separated by 89 nucleotidesPsyr_4230 and Psyr_4231 overlap by 4 nucleotides Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229 _4229 Psyr_4230: Psyr_4230 - Helix-turn-helix, Fis-type, at 5,038,319 to 5,038,882 _4230 Psyr_4231: Psyr_4231 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,038,879 to 5,040,138 _4231 Position (kb) 5038 5039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5037.328 kb on + strand, within Psyr_4229at 5037.328 kb on + strand, within Psyr_4229at 5037.329 kb on - strand, within Psyr_4229at 5037.432 kb on - strand, within Psyr_4229at 5037.628 kb on + strand, within Psyr_4229at 5037.629 kb on - strand, within Psyr_4229at 5037.629 kb on - strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.650 kb on + strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.651 kb on - strand, within Psyr_4229at 5037.652 kb on + strand, within Psyr_4229at 5037.653 kb on - strand, within Psyr_4229at 5037.653 kb on - strand, within Psyr_4229at 5037.653 kb on - strand, within Psyr_4229at 5037.653 kb on - strand, within Psyr_4229at 5037.653 kb on - strand, within Psyr_4229at 5037.653 kb on - strand, within Psyr_4229at 5037.824 kb on - strand, within Psyr_4229at 5037.847 kb on + strand, within Psyr_4229at 5037.847 kb on + strand, within Psyr_4229at 5037.848 kb on - strand, within Psyr_4229at 5037.928 kb on + strand, within Psyr_4229at 5037.929 kb on - strand, within Psyr_4229at 5037.929 kb on - strand, within Psyr_4229at 5037.979 kb on + strand, within Psyr_4229at 5037.979 kb on + strand, within Psyr_4229at 5038.030 kb on + strand, within Psyr_4229at 5038.030 kb on + strand, within Psyr_4229at 5038.030 kb on + strand, within Psyr_4229at 5038.031 kb on - strand, within Psyr_4229at 5038.031 kb on - strand, within Psyr_4229at 5038.031 kb on - strand, within Psyr_4229at 5038.194 kb on - strandat 5038.257 kb on + strandat 5038.257 kb on + strandat 5038.257 kb on + strandat 5038.257 kb on + strandat 5038.257 kb on + strandat 5038.257 kb on + strandat 5038.258 kb on - strandat 5038.258 kb on - strandat 5038.258 kb on - strandat 5038.304 kb on - strandat 5038.399 kb on + strand, within Psyr_4230at 5038.399 kb on + strand, within Psyr_4230at 5038.399 kb on + strand, within Psyr_4230at 5038.399 kb on + strand, within Psyr_4230at 5038.400 kb on - strand, within Psyr_4230at 5038.400 kb on - strand, within Psyr_4230at 5038.400 kb on - strand, within Psyr_4230at 5038.432 kb on + strand, within Psyr_4230at 5038.433 kb on - strand, within Psyr_4230at 5038.520 kb on + strand, within Psyr_4230at 5038.520 kb on + strand, within Psyr_4230at 5038.520 kb on + strand, within Psyr_4230at 5038.520 kb on + strand, within Psyr_4230at 5038.520 kb on + strand, within Psyr_4230at 5038.521 kb on - strand, within Psyr_4230at 5038.551 kb on + strand, within Psyr_4230at 5038.551 kb on + strand, within Psyr_4230at 5038.551 kb on + strand, within Psyr_4230at 5038.551 kb on + strand, within Psyr_4230at 5038.551 kb on + strand, within Psyr_4230at 5038.552 kb on - strand, within Psyr_4230at 5038.552 kb on - strand, within Psyr_4230at 5038.552 kb on - strand, within Psyr_4230at 5038.552 kb on - strand, within Psyr_4230at 5038.552 kb on - strand, within Psyr_4230at 5038.552 kb on - strand, within Psyr_4230at 5038.704 kb on + strand, within Psyr_4230at 5038.826 kb on + strandat 5038.826 kb on + strandat 5038.826 kb on + strandat 5038.827 kb on - strandat 5038.827 kb on - strandat 5038.949 kb on + strandat 5038.950 kb on - strandat 5039.028 kb on + strand, within Psyr_4231at 5039.029 kb on - strand, within Psyr_4231at 5039.031 kb on + strand, within Psyr_4231at 5039.242 kb on - strand, within Psyr_4231at 5039.242 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.244 kb on - strand, within Psyr_4231at 5039.253 kb on - strand, within Psyr_4231at 5039.334 kb on + strand, within Psyr_4231at 5039.334 kb on + strand, within Psyr_4231at 5039.335 kb on - strand, within Psyr_4231at 5039.335 kb on - strand, within Psyr_4231at 5039.669 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strandat 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.774 kb on + strandat 5039.819 kb on + strand, within Psyr_4231at 5039.819 kb on + strand, within Psyr_4231at 5039.819 kb on + strand, within Psyr_4231at 5039.820 kb on - strand, within Psyr_4231at 5039.823 kb on - strand, within Psyr_4231at 5039.858 kb on + strand, within Psyr_4231at 5039.858 kb on + strand, within Psyr_4231at 5039.858 kb on + strand, within Psyr_4231at 5039.859 kb on - strand, within Psyr_4231at 5039.859 kb on - strand, within Psyr_4231at 5039.859 kb on - strand, within Psyr_4231

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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5,037,328 + Psyr_4229 0.48 +0.7
5,037,328 + Psyr_4229 0.48 +2.2
5,037,329 - Psyr_4229 0.48 -0.1
5,037,432 - Psyr_4229 0.54 -0.8
5,037,628 + Psyr_4229 0.65 +0.9
5,037,629 - Psyr_4229 0.65 -0.2
5,037,629 - Psyr_4229 0.65 +1.0
5,037,650 + Psyr_4229 0.66 +0.7
5,037,650 + Psyr_4229 0.66 +0.5
5,037,650 + Psyr_4229 0.66 -0.0
5,037,650 + Psyr_4229 0.66 -0.4
5,037,650 + Psyr_4229 0.66 +1.2
5,037,650 + Psyr_4229 0.66 +0.8
5,037,650 + Psyr_4229 0.66 -0.0
5,037,650 + Psyr_4229 0.66 +0.3
5,037,650 + Psyr_4229 0.66 +0.2
5,037,650 + Psyr_4229 0.66 +1.2
5,037,650 + Psyr_4229 0.66 +0.2
5,037,650 + Psyr_4229 0.66 +1.0
5,037,650 + Psyr_4229 0.66 +3.2
5,037,650 + Psyr_4229 0.66 +1.5
5,037,651 - Psyr_4229 0.66 +2.0
5,037,651 - Psyr_4229 0.66 +1.1
5,037,651 - Psyr_4229 0.66 +0.4
5,037,651 - Psyr_4229 0.66 +0.2
5,037,651 - Psyr_4229 0.66 +1.2
5,037,651 - Psyr_4229 0.66 +1.4
5,037,651 - Psyr_4229 0.66 +3.0
5,037,651 - Psyr_4229 0.66 -1.2
5,037,651 - Psyr_4229 0.66 -0.4
5,037,651 - Psyr_4229 0.66 +0.3
5,037,651 - Psyr_4229 0.66 +0.6
5,037,652 + Psyr_4229 0.66 +1.6
5,037,653 - Psyr_4229 0.66 -1.4
5,037,653 - Psyr_4229 0.66 -0.3
5,037,653 - Psyr_4229 0.66 +0.5
5,037,653 - Psyr_4229 0.66 +0.5
5,037,653 - Psyr_4229 0.66 -0.9
5,037,653 - Psyr_4229 0.66 -1.6
5,037,824 - Psyr_4229 0.76 -0.6
5,037,847 + Psyr_4229 0.78 -0.8
5,037,847 + Psyr_4229 0.78 -0.4
5,037,848 - Psyr_4229 0.78 +0.8
5,037,928 + Psyr_4229 0.82 -0.2
5,037,929 - Psyr_4229 0.82 -0.3
5,037,929 - Psyr_4229 0.82 +2.7
5,037,979 + Psyr_4229 0.85 -1.5
5,037,979 + Psyr_4229 0.85 -0.1
5,038,030 + Psyr_4229 0.88 -0.1
5,038,030 + Psyr_4229 0.88 +0.9
5,038,030 + Psyr_4229 0.88 +0.2
5,038,031 - Psyr_4229 0.88 +1.2
5,038,031 - Psyr_4229 0.88 -0.9
5,038,031 - Psyr_4229 0.88 +0.9
5,038,194 - -0.6
5,038,257 + -1.3
5,038,257 + +0.2
5,038,257 + -0.3
5,038,257 + -0.6
5,038,257 + -0.6
5,038,257 + -1.9
5,038,258 - +1.3
5,038,258 - -1.7
5,038,258 - -1.4
5,038,304 - -0.3
5,038,399 + Psyr_4230 0.14 +0.0
5,038,399 + Psyr_4230 0.14 -1.2
5,038,399 + Psyr_4230 0.14 -0.1
5,038,399 + Psyr_4230 0.14 -1.3
5,038,400 - Psyr_4230 0.14 -1.3
5,038,400 - Psyr_4230 0.14 -0.3
5,038,400 - Psyr_4230 0.14 -1.5
5,038,432 + Psyr_4230 0.20 -2.5
5,038,433 - Psyr_4230 0.20 -1.2
5,038,520 + Psyr_4230 0.36 -0.9
5,038,520 + Psyr_4230 0.36 -0.1
5,038,520 + Psyr_4230 0.36 +0.5
5,038,520 + Psyr_4230 0.36 -1.6
5,038,520 + Psyr_4230 0.36 -0.8
5,038,521 - Psyr_4230 0.36 -1.4
5,038,551 + Psyr_4230 0.41 -0.8
5,038,551 + Psyr_4230 0.41 -1.9
5,038,551 + Psyr_4230 0.41 -0.8
5,038,551 + Psyr_4230 0.41 -2.4
5,038,551 + Psyr_4230 0.41 -0.6
5,038,552 - Psyr_4230 0.41 -0.3
5,038,552 - Psyr_4230 0.41 -2.7
5,038,552 - Psyr_4230 0.41 -0.7
5,038,552 - Psyr_4230 0.41 -1.2
5,038,552 - Psyr_4230 0.41 -1.4
5,038,552 - Psyr_4230 0.41 -1.4
5,038,704 + Psyr_4230 0.68 -1.8
5,038,826 + -1.3
5,038,826 + -1.2
5,038,826 + -1.8
5,038,827 - +0.2
5,038,827 - -1.0
5,038,949 + -2.8
5,038,950 - -0.6
5,039,028 + Psyr_4231 0.12 +0.5
5,039,029 - Psyr_4231 0.12 -0.6
5,039,031 + Psyr_4231 0.12 +1.2
5,039,242 - Psyr_4231 0.29 -1.2
5,039,242 - Psyr_4231 0.29 -0.5
5,039,244 - Psyr_4231 0.29 -2.7
5,039,244 - Psyr_4231 0.29 -0.8
5,039,244 - Psyr_4231 0.29 -0.4
5,039,244 - Psyr_4231 0.29 -1.6
5,039,244 - Psyr_4231 0.29 -1.8
5,039,244 - Psyr_4231 0.29 -1.0
5,039,244 - Psyr_4231 0.29 -0.2
5,039,244 - Psyr_4231 0.29 +1.0
5,039,253 - Psyr_4231 0.30 -1.7
5,039,334 + Psyr_4231 0.36 -2.7
5,039,334 + Psyr_4231 0.36 +0.5
5,039,335 - Psyr_4231 0.36 -1.8
5,039,335 - Psyr_4231 0.36 -0.7
5,039,669 + Psyr_4231 0.63 -0.3
5,039,738 + Psyr_4231 0.68 -1.2
5,039,738 + Psyr_4231 0.68 +0.2
5,039,738 + Psyr_4231 0.68 -1.9
5,039,738 + Psyr_4231 0.68 -0.2
5,039,738 + Psyr_4231 0.68 -0.0
5,039,738 + Psyr_4231 0.68 -1.0
5,039,738 + Psyr_4231 0.68 +0.6
5,039,738 + Psyr_4231 0.68 -1.5
5,039,739 - Psyr_4231 0.68 -0.4
5,039,739 - Psyr_4231 0.68 +2.2
5,039,739 - Psyr_4231 0.68 -0.5
5,039,739 - Psyr_4231 0.68 -1.4
5,039,739 - Psyr_4231 0.68 -0.8
5,039,739 - -1.6
5,039,739 - Psyr_4231 0.68 -1.4
5,039,739 - Psyr_4231 0.68 -1.6
5,039,739 - Psyr_4231 0.68 -0.6
5,039,739 - Psyr_4231 0.68 -2.4
5,039,739 - Psyr_4231 0.68 -2.5
5,039,739 - Psyr_4231 0.68 -1.1
5,039,739 - Psyr_4231 0.68 -2.2
5,039,739 - Psyr_4231 0.68 -3.3
5,039,739 - Psyr_4231 0.68 -1.2
5,039,774 + +2.2
5,039,819 + Psyr_4231 0.75 -1.1
5,039,819 + Psyr_4231 0.75 -1.3
5,039,819 + Psyr_4231 0.75 -1.6
5,039,820 - Psyr_4231 0.75 -1.4
5,039,823 - Psyr_4231 0.75 -2.0
5,039,858 + Psyr_4231 0.78 -0.7
5,039,858 + Psyr_4231 0.78 -1.8
5,039,858 + Psyr_4231 0.78 -1.4
5,039,859 - Psyr_4231 0.78 -2.3
5,039,859 - Psyr_4231 0.78 +1.2
5,039,859 - Psyr_4231 0.78 -0.7

Or see this region's nucleotide sequence