Experiment: KB with Avocadyne 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3990 and Psyr_3991 are separated by 59 nucleotides Psyr_3991 and Psyr_3992 are separated by 25 nucleotides Psyr_3992 and Psyr_3993 are separated by 336 nucleotides
Psyr_3990: Psyr_3990 - conserved hypothetical protein, at 4,748,908 to 4,749,918
_3990
Psyr_3991: Psyr_3991 - Protein of unknown function DUF477, at 4,749,978 to 4,750,595
_3991
Psyr_3992: Psyr_3992 - Protein of unknown function DUF477, at 4,750,621 to 4,751,334
_3992
Psyr_3993: Psyr_3993 - Glycoside hydrolase, family 3, N-terminal:Glycoside hydrolase, family 3, C-terminal, at 4,751,671 to 4,753,932
_3993
Position (kb) 4750
4751
4752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4749.655 kb on + strand, within Psyr_3990 at 4749.656 kb on - strand, within Psyr_3990 at 4749.658 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.803 kb on - strand, within Psyr_3990 at 4749.880 kb on + strand at 4749.880 kb on + strand at 4749.880 kb on + strand at 4749.881 kb on - strand at 4749.881 kb on - strand at 4749.884 kb on + strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.885 kb on - strand at 4749.895 kb on + strand at 4749.895 kb on + strand at 4749.934 kb on + strand at 4749.934 kb on + strand at 4749.934 kb on + strand at 4749.934 kb on + strand at 4749.935 kb on - strand at 4749.935 kb on - strand at 4749.935 kb on - strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.936 kb on + strand at 4749.937 kb on - strand at 4749.937 kb on - strand at 4749.937 kb on - strand at 4749.937 kb on - strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.032 kb on + strand at 4750.033 kb on - strand at 4750.033 kb on - strand at 4750.033 kb on - strand at 4750.033 kb on - strand at 4750.067 kb on + strand, within Psyr_3991 at 4750.068 kb on - strand, within Psyr_3991 at 4750.068 kb on - strand, within Psyr_3991 at 4750.068 kb on - strand, within Psyr_3991 at 4750.192 kb on + strand, within Psyr_3991 at 4750.192 kb on + strand, within Psyr_3991 at 4750.192 kb on + strand, within Psyr_3991 at 4750.193 kb on - strand, within Psyr_3991 at 4750.193 kb on - strand, within Psyr_3991 at 4750.361 kb on + strand, within Psyr_3991 at 4750.362 kb on - strand, within Psyr_3991 at 4750.370 kb on + strand, within Psyr_3991 at 4750.370 kb on + strand, within Psyr_3991 at 4750.371 kb on - strand, within Psyr_3991 at 4750.371 kb on - strand, within Psyr_3991 at 4750.420 kb on + strand, within Psyr_3991 at 4750.420 kb on + strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.421 kb on - strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.477 kb on + strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.478 kb on - strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.483 kb on + strand, within Psyr_3991 at 4750.484 kb on - strand, within Psyr_3991 at 4750.484 kb on - strand, within Psyr_3991 at 4750.484 kb on - strand, within Psyr_3991 at 4750.588 kb on - strand at 4750.726 kb on + strand, within Psyr_3992 at 4750.726 kb on + strand, within Psyr_3992 at 4750.726 kb on + strand, within Psyr_3992 at 4750.726 kb on + strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.727 kb on - strand, within Psyr_3992 at 4750.799 kb on + strand, within Psyr_3992 at 4750.800 kb on - strand at 4750.883 kb on - strand, within Psyr_3992 at 4751.282 kb on - strand at 4751.306 kb on + strand at 4751.306 kb on + strand at 4751.306 kb on + strand at 4751.306 kb on + strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.307 kb on - strand at 4751.408 kb on - strand at 4751.438 kb on - strand at 4751.487 kb on + strand at 4751.488 kb on - strand at 4751.488 kb on - strand at 4751.488 kb on - strand at 4751.509 kb on + strand at 4751.531 kb on - strand at 4751.546 kb on - strand at 4751.546 kb on - strand at 4751.546 kb on - strand at 4751.596 kb on + strand at 4751.596 kb on + strand at 4751.596 kb on + strand at 4751.608 kb on - strand at 4751.608 kb on - strand at 4751.640 kb on + strand at 4751.641 kb on - strand at 4751.654 kb on + strand at 4751.654 kb on + strand at 4751.654 kb on + strand at 4751.655 kb on - strand at 4751.655 kb on - strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.718 kb on + strand at 4751.719 kb on - strand at 4751.719 kb on - strand at 4751.719 kb on - strand at 4751.719 kb on - strand at 4751.719 kb on - strand at 4751.719 kb on - strand at 4751.808 kb on + strand at 4751.962 kb on + strand, within Psyr_3993 at 4752.114 kb on + strand, within Psyr_3993 at 4752.115 kb on - strand, within Psyr_3993 at 4752.169 kb on + strand, within Psyr_3993 at 4752.169 kb on + strand, within Psyr_3993 at 4752.169 kb on + strand, within Psyr_3993 at 4752.169 kb on + strand, within Psyr_3993 at 4752.170 kb on - strand, within Psyr_3993 at 4752.170 kb on - strand, within Psyr_3993 at 4752.170 kb on - strand, within Psyr_3993 at 4752.281 kb on + strand, within Psyr_3993 at 4752.281 kb on + strand, within Psyr_3993 at 4752.281 kb on + strand, within Psyr_3993 at 4752.298 kb on + strand, within Psyr_3993 at 4752.299 kb on - strand, within Psyr_3993 at 4752.299 kb on - strand, within Psyr_3993 at 4752.331 kb on + strand, within Psyr_3993 at 4752.331 kb on + strand, within Psyr_3993 at 4752.332 kb on - strand, within Psyr_3993 at 4752.332 kb on - strand, within Psyr_3993 at 4752.332 kb on - strand, within Psyr_3993 at 4752.332 kb on - strand, within Psyr_3993
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM remove 4,749,655 + Psyr_3990 0.74 -1.1 4,749,656 - Psyr_3990 0.74 -0.4 4,749,658 - Psyr_3990 0.74 +0.5 4,749,803 - Psyr_3990 0.89 -0.2 4,749,803 - Psyr_3990 0.89 -1.1 4,749,803 - Psyr_3990 0.89 +0.9 4,749,803 - Psyr_3990 0.89 +1.0 4,749,803 - Psyr_3990 0.89 +1.0 4,749,880 + -0.3 4,749,880 + +0.1 4,749,880 + +0.3 4,749,881 - -1.0 4,749,881 - +0.4 4,749,884 + +0.7 4,749,885 - +0.7 4,749,885 - +0.5 4,749,885 - +1.1 4,749,885 - -1.6 4,749,885 - +1.1 4,749,885 - +1.1 4,749,885 - -0.1 4,749,895 + +2.1 4,749,895 + +1.3 4,749,934 + -2.6 4,749,934 + -0.0 4,749,934 + -3.8 4,749,934 + +1.2 4,749,935 - +0.4 4,749,935 - -1.9 4,749,935 - -1.9 4,749,936 + -0.1 4,749,936 + -0.2 4,749,936 + -0.2 4,749,936 + +1.1 4,749,936 + -2.3 4,749,936 + -1.7 4,749,937 - +3.2 4,749,937 - -0.2 4,749,937 - -1.0 4,749,937 - -0.6 4,750,032 + +1.2 4,750,032 + +0.5 4,750,032 + -1.8 4,750,032 + +0.2 4,750,032 + +0.9 4,750,032 + +0.1 4,750,032 + -0.1 4,750,032 + +0.3 4,750,032 + +0.5 4,750,032 + +1.1 4,750,033 - -0.9 4,750,033 - -0.1 4,750,033 - -1.6 4,750,033 - -1.9 4,750,067 + Psyr_3991 0.14 +0.2 4,750,068 - Psyr_3991 0.15 +0.5 4,750,068 - Psyr_3991 0.15 +0.4 4,750,068 - Psyr_3991 0.15 +1.5 4,750,192 + Psyr_3991 0.35 -0.2 4,750,192 + Psyr_3991 0.35 -0.2 4,750,192 + Psyr_3991 0.35 +1.4 4,750,193 - Psyr_3991 0.35 -0.7 4,750,193 - Psyr_3991 0.35 -1.0 4,750,361 + Psyr_3991 0.62 -2.1 4,750,362 - Psyr_3991 0.62 +0.7 4,750,370 + Psyr_3991 0.63 -0.2 4,750,370 + Psyr_3991 0.63 +0.9 4,750,371 - Psyr_3991 0.64 +1.0 4,750,371 - Psyr_3991 0.64 -1.9 4,750,420 + Psyr_3991 0.72 -1.0 4,750,420 + Psyr_3991 0.72 -0.6 4,750,421 - Psyr_3991 0.72 -0.1 4,750,421 - Psyr_3991 0.72 -1.6 4,750,421 - Psyr_3991 0.72 +0.5 4,750,421 - Psyr_3991 0.72 +3.1 4,750,421 - Psyr_3991 0.72 -0.4 4,750,421 - Psyr_3991 0.72 -0.3 4,750,477 + Psyr_3991 0.81 +1.7 4,750,477 + Psyr_3991 0.81 +0.1 4,750,477 + Psyr_3991 0.81 +1.1 4,750,477 + Psyr_3991 0.81 -0.5 4,750,477 + Psyr_3991 0.81 -1.5 4,750,477 + Psyr_3991 0.81 +0.5 4,750,477 + Psyr_3991 0.81 -0.7 4,750,477 + Psyr_3991 0.81 -1.3 4,750,477 + Psyr_3991 0.81 +0.6 4,750,477 + Psyr_3991 0.81 -0.6 4,750,478 - Psyr_3991 0.81 -0.6 4,750,478 - Psyr_3991 0.81 +0.5 4,750,478 - Psyr_3991 0.81 +0.4 4,750,478 - Psyr_3991 0.81 -0.6 4,750,478 - Psyr_3991 0.81 -1.5 4,750,478 - Psyr_3991 0.81 -0.7 4,750,478 - Psyr_3991 0.81 -0.0 4,750,483 + Psyr_3991 0.82 -1.0 4,750,483 + Psyr_3991 0.82 +0.2 4,750,483 + Psyr_3991 0.82 +1.7 4,750,483 + Psyr_3991 0.82 +0.2 4,750,484 - Psyr_3991 0.82 -0.1 4,750,484 - Psyr_3991 0.82 -0.3 4,750,484 - Psyr_3991 0.82 +0.9 4,750,588 - +0.8 4,750,726 + Psyr_3992 0.15 -0.0 4,750,726 + Psyr_3992 0.15 -3.5 4,750,726 + Psyr_3992 0.15 -2.3 4,750,726 + Psyr_3992 0.15 -2.3 4,750,727 - Psyr_3992 0.15 -0.9 4,750,727 - Psyr_3992 0.15 +0.0 4,750,727 - Psyr_3992 0.15 -2.3 4,750,727 - Psyr_3992 0.15 -1.3 4,750,727 - Psyr_3992 0.15 -2.1 4,750,727 - Psyr_3992 0.15 -0.2 4,750,727 - Psyr_3992 0.15 +3.2 4,750,727 - Psyr_3992 0.15 +0.1 4,750,799 + Psyr_3992 0.25 -1.1 4,750,800 - -2.1 4,750,883 - Psyr_3992 0.37 -1.3 4,751,282 - -1.8 4,751,306 + -1.0 4,751,306 + -0.7 4,751,306 + -1.0 4,751,306 + +0.1 4,751,307 - -0.3 4,751,307 - -0.7 4,751,307 - -1.3 4,751,307 - +1.1 4,751,307 - -0.3 4,751,307 - -0.6 4,751,307 - +0.7 4,751,307 - +0.7 4,751,408 - -0.4 4,751,438 - +0.8 4,751,487 + -0.2 4,751,488 - +0.4 4,751,488 - -1.0 4,751,488 - +1.0 4,751,509 + +1.3 4,751,531 - -0.0 4,751,546 - +3.1 4,751,546 - +1.6 4,751,546 - -0.9 4,751,596 + -0.1 4,751,596 + -0.3 4,751,596 + -1.0 4,751,608 - +2.8 4,751,608 - +0.7 4,751,640 + -0.5 4,751,641 - +0.2 4,751,654 + +1.1 4,751,654 + +0.2 4,751,654 + -1.2 4,751,655 - +0.4 4,751,655 - +1.1 4,751,718 + -1.5 4,751,718 + -2.1 4,751,718 + +0.3 4,751,718 + -1.8 4,751,718 + +3.4 4,751,718 + -0.3 4,751,718 + -0.1 4,751,718 + +1.1 4,751,719 - +1.7 4,751,719 - +1.3 4,751,719 - +0.5 4,751,719 - +1.3 4,751,719 - -1.8 4,751,719 - -0.8 4,751,808 + -0.2 4,751,962 + Psyr_3993 0.13 +0.9 4,752,114 + Psyr_3993 0.20 +0.7 4,752,115 - Psyr_3993 0.20 -0.9 4,752,169 + Psyr_3993 0.22 -0.7 4,752,169 + Psyr_3993 0.22 +1.1 4,752,169 + Psyr_3993 0.22 -0.9 4,752,169 + Psyr_3993 0.22 -0.3 4,752,170 - Psyr_3993 0.22 +0.3 4,752,170 - Psyr_3993 0.22 -0.4 4,752,170 - Psyr_3993 0.22 -0.1 4,752,281 + Psyr_3993 0.27 +0.0 4,752,281 + Psyr_3993 0.27 +0.4 4,752,281 + Psyr_3993 0.27 +0.7 4,752,298 + Psyr_3993 0.28 +0.7 4,752,299 - Psyr_3993 0.28 -1.6 4,752,299 - Psyr_3993 0.28 -0.4 4,752,331 + Psyr_3993 0.29 +0.0 4,752,331 + Psyr_3993 0.29 -1.7 4,752,332 - Psyr_3993 0.29 +0.8 4,752,332 - Psyr_3993 0.29 -0.0 4,752,332 - Psyr_3993 0.29 +0.5 4,752,332 - Psyr_3993 0.29 -1.3
Or see this region's nucleotide sequence