Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3270

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3269 and Psyr_3270 are separated by 42 nucleotidesPsyr_3270 and Psyr_3271 are separated by 35 nucleotides Psyr_3269: Psyr_3269 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 3,914,548 to 3,916,485 _3269 Psyr_3270: Psyr_3270 - AP endonuclease, family 2, at 3,916,528 to 3,917,358 _3270 Psyr_3271: Psyr_3271 - methylmalonate-semialdehyde dehydrogenase (acylating), at 3,917,394 to 3,918,896 _3271 Position (kb) 3916 3917 3918Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3915.811 kb on + strand, within Psyr_3269at 3915.811 kb on + strand, within Psyr_3269at 3915.811 kb on + strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.812 kb on - strand, within Psyr_3269at 3915.903 kb on - strandat 3916.031 kb on + strand, within Psyr_3269at 3916.427 kb on + strandat 3916.428 kb on - strandat 3916.428 kb on - strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.479 kb on + strandat 3916.480 kb on - strandat 3916.480 kb on - strandat 3916.480 kb on - strandat 3916.480 kb on - strandat 3916.647 kb on - strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.770 kb on + strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.771 kb on - strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.774 kb on + strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3916.775 kb on - strand, within Psyr_3270at 3917.171 kb on - strand, within Psyr_3270at 3917.395 kb on + strandat 3917.395 kb on + strandat 3917.396 kb on - strandat 3917.396 kb on - strandat 3917.477 kb on - strandat 3917.752 kb on + strand, within Psyr_3271at 3917.752 kb on + strand, within Psyr_3271at 3917.752 kb on + strand, within Psyr_3271at 3918.067 kb on + strand, within Psyr_3271at 3918.068 kb on - strand, within Psyr_3271at 3918.128 kb on + strand, within Psyr_3271at 3918.128 kb on + strand, within Psyr_3271at 3918.129 kb on - strand, within Psyr_3271at 3918.129 kb on - strand, within Psyr_3271at 3918.129 kb on - strand, within Psyr_3271at 3918.129 kb on - strand, within Psyr_3271at 3918.193 kb on + strand, within Psyr_3271at 3918.193 kb on + strand, within Psyr_3271at 3918.193 kb on + strand, within Psyr_3271at 3918.194 kb on - strand, within Psyr_3271at 3918.194 kb on - strand, within Psyr_3271at 3918.194 kb on - strand, within Psyr_3271at 3918.194 kb on - strand, within Psyr_3271at 3918.194 kb on - strand, within Psyr_3271at 3918.194 kb on - strand, within Psyr_3271

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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3,915,811 + Psyr_3269 0.65 +1.0
3,915,811 + Psyr_3269 0.65 -0.2
3,915,811 + Psyr_3269 0.65 +0.6
3,915,812 - Psyr_3269 0.65 -0.8
3,915,812 - Psyr_3269 0.65 +1.0
3,915,812 - Psyr_3269 0.65 +1.0
3,915,812 - Psyr_3269 0.65 +0.1
3,915,812 - Psyr_3269 0.65 +0.8
3,915,812 - Psyr_3269 0.65 +0.1
3,915,812 - Psyr_3269 0.65 -1.2
3,915,903 - +2.6
3,916,031 + Psyr_3269 0.77 +0.7
3,916,427 + +2.0
3,916,428 - +0.6
3,916,428 - -0.0
3,916,479 + -0.4
3,916,479 + +1.4
3,916,479 + -0.9
3,916,479 + +0.1
3,916,479 + -0.9
3,916,480 - -1.9
3,916,480 - -1.9
3,916,480 - -0.1
3,916,480 - -0.8
3,916,647 - Psyr_3270 0.14 -0.6
3,916,770 + Psyr_3270 0.29 -0.6
3,916,770 + Psyr_3270 0.29 +2.6
3,916,770 + Psyr_3270 0.29 -0.1
3,916,770 + Psyr_3270 0.29 -0.0
3,916,770 + Psyr_3270 0.29 +1.1
3,916,770 + Psyr_3270 0.29 -0.9
3,916,770 + Psyr_3270 0.29 -0.6
3,916,770 + Psyr_3270 0.29 +0.1
3,916,770 + Psyr_3270 0.29 -2.6
3,916,771 - Psyr_3270 0.29 +1.3
3,916,771 - Psyr_3270 0.29 +2.6
3,916,771 - Psyr_3270 0.29 +2.8
3,916,771 - Psyr_3270 0.29 +1.8
3,916,771 - Psyr_3270 0.29 +1.8
3,916,771 - Psyr_3270 0.29 -1.6
3,916,771 - Psyr_3270 0.29 +0.4
3,916,771 - Psyr_3270 0.29 +1.0
3,916,771 - Psyr_3270 0.29 -0.6
3,916,774 + Psyr_3270 0.30 +0.8
3,916,774 + Psyr_3270 0.30 +1.4
3,916,774 + Psyr_3270 0.30 +0.0
3,916,774 + Psyr_3270 0.30 +0.9
3,916,774 + Psyr_3270 0.30 -0.1
3,916,774 + Psyr_3270 0.30 +0.3
3,916,774 + Psyr_3270 0.30 -0.2
3,916,775 - Psyr_3270 0.30 +1.7
3,916,775 - Psyr_3270 0.30 +0.3
3,916,775 - Psyr_3270 0.30 +2.1
3,916,775 - Psyr_3270 0.30 +1.5
3,916,775 - Psyr_3270 0.30 +0.8
3,917,171 - Psyr_3270 0.77 +0.2
3,917,395 + +0.4
3,917,395 + -1.2
3,917,396 - -2.9
3,917,396 - +0.7
3,917,477 - +0.6
3,917,752 + Psyr_3271 0.24 -2.3
3,917,752 + Psyr_3271 0.24 +0.1
3,917,752 + Psyr_3271 0.24 +0.7
3,918,067 + Psyr_3271 0.45 +0.7
3,918,068 - Psyr_3271 0.45 -1.8
3,918,128 + Psyr_3271 0.49 -1.6
3,918,128 + Psyr_3271 0.49 -0.6
3,918,129 - Psyr_3271 0.49 +0.4
3,918,129 - Psyr_3271 0.49 -1.9
3,918,129 - Psyr_3271 0.49 +0.2
3,918,129 - Psyr_3271 0.49 -0.8
3,918,193 + Psyr_3271 0.53 -0.9
3,918,193 + Psyr_3271 0.53 +1.2
3,918,193 + Psyr_3271 0.53 -0.2
3,918,194 - Psyr_3271 0.53 -0.8
3,918,194 - Psyr_3271 0.53 +1.2
3,918,194 - Psyr_3271 0.53 +0.1
3,918,194 - Psyr_3271 0.53 -0.5
3,918,194 - Psyr_3271 0.53 +1.0
3,918,194 - Psyr_3271 0.53 -1.2

Or see this region's nucleotide sequence