Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1456

Experiment: KB with Avocadyne 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1454 and Psyr_1455 are separated by 11 nucleotidesPsyr_1455 and Psyr_1456 overlap by 4 nucleotidesPsyr_1456 and Psyr_1457 overlap by 16 nucleotidesPsyr_1457 and Psyr_1458 are separated by 8 nucleotides Psyr_1454: Psyr_1454 - hypothetical protein, at 1,640,953 to 1,643,112 _1454 Psyr_1455: Psyr_1455 - conserved hypothetical protein, at 1,643,124 to 1,643,630 _1455 Psyr_1456: Psyr_1456 - conserved hypothetical protein, at 1,643,627 to 1,644,184 _1456 Psyr_1457: Psyr_1457 - conserved hypothetical protein, at 1,644,169 to 1,644,915 _1457 Psyr_1458: Psyr_1458 - hypothetical protein, at 1,644,924 to 1,645,634 _1458 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1642.757 kb on + strand, within Psyr_1454at 1642.757 kb on + strand, within Psyr_1454at 1642.757 kb on + strand, within Psyr_1454at 1642.757 kb on + strand, within Psyr_1454at 1642.757 kb on + strand, within Psyr_1454at 1642.757 kb on + strand, within Psyr_1454at 1642.758 kb on - strand, within Psyr_1454at 1642.758 kb on - strand, within Psyr_1454at 1642.758 kb on - strand, within Psyr_1454at 1642.758 kb on - strand, within Psyr_1454at 1642.758 kb on - strand, within Psyr_1454at 1642.767 kb on - strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.778 kb on + strand, within Psyr_1454at 1642.779 kb on - strand, within Psyr_1454at 1642.779 kb on - strand, within Psyr_1454at 1642.779 kb on - strand, within Psyr_1454at 1642.779 kb on - strand, within Psyr_1454at 1642.779 kb on - strand, within Psyr_1454at 1642.880 kb on + strand, within Psyr_1454at 1642.880 kb on + strand, within Psyr_1454at 1642.880 kb on + strand, within Psyr_1454at 1642.945 kb on + strandat 1642.945 kb on + strandat 1642.946 kb on - strandat 1642.996 kb on - strandat 1642.996 kb on - strandat 1643.051 kb on + strandat 1643.051 kb on + strandat 1643.051 kb on + strandat 1643.051 kb on + strandat 1643.051 kb on + strandat 1643.052 kb on - strandat 1643.052 kb on - strandat 1643.060 kb on + strandat 1643.060 kb on + strandat 1643.060 kb on + strandat 1643.061 kb on - strandat 1643.061 kb on - strandat 1643.061 kb on - strandat 1643.061 kb on - strandat 1643.068 kb on + strandat 1643.069 kb on - strandat 1643.125 kb on + strandat 1643.125 kb on + strandat 1643.126 kb on - strandat 1643.323 kb on - strand, within Psyr_1455at 1643.451 kb on + strand, within Psyr_1455at 1643.452 kb on - strand, within Psyr_1455at 1643.452 kb on - strand, within Psyr_1455at 1643.452 kb on - strand, within Psyr_1455at 1643.519 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.522 kb on - strand, within Psyr_1455at 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.585 kb on + strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.586 kb on - strandat 1643.695 kb on - strand, within Psyr_1456at 1643.795 kb on + strand, within Psyr_1456at 1643.795 kb on + strand, within Psyr_1456at 1643.795 kb on + strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.796 kb on - strand, within Psyr_1456at 1643.812 kb on - strand, within Psyr_1456at 1643.929 kb on + strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.930 kb on - strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.971 kb on + strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1643.972 kb on - strand, within Psyr_1456at 1644.055 kb on - strand, within Psyr_1456at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.359 kb on + strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.360 kb on - strand, within Psyr_1457at 1644.545 kb on + strand, within Psyr_1457at 1644.546 kb on - strand, within Psyr_1457at 1644.546 kb on - strand, within Psyr_1457at 1644.546 kb on - strand, within Psyr_1457at 1644.557 kb on + strand, within Psyr_1457at 1644.558 kb on - strand, within Psyr_1457at 1644.680 kb on + strand, within Psyr_1457at 1644.681 kb on - strand, within Psyr_1457at 1644.681 kb on - strand, within Psyr_1457at 1644.905 kb on + strandat 1644.906 kb on - strandat 1644.906 kb on - strandat 1644.925 kb on + strandat 1645.035 kb on + strand, within Psyr_1458at 1645.036 kb on - strand, within Psyr_1458at 1645.105 kb on + strand, within Psyr_1458at 1645.106 kb on - strand, within Psyr_1458

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
remove
1,642,757 + Psyr_1454 0.84 +0.2
1,642,757 + Psyr_1454 0.84 -0.4
1,642,757 + Psyr_1454 0.84 -0.4
1,642,757 + Psyr_1454 0.84 +0.3
1,642,757 + Psyr_1454 0.84 -0.3
1,642,757 + Psyr_1454 0.84 -0.9
1,642,758 - Psyr_1454 0.84 -1.7
1,642,758 - Psyr_1454 0.84 -1.5
1,642,758 - Psyr_1454 0.84 -0.9
1,642,758 - Psyr_1454 0.84 -0.4
1,642,758 - Psyr_1454 0.84 +1.2
1,642,767 - Psyr_1454 0.84 +1.8
1,642,778 + Psyr_1454 0.84 -0.6
1,642,778 + Psyr_1454 0.84 -1.7
1,642,778 + Psyr_1454 0.84 -0.9
1,642,778 + Psyr_1454 0.84 +0.2
1,642,778 + Psyr_1454 0.84 -0.6
1,642,778 + Psyr_1454 0.84 +0.1
1,642,778 + Psyr_1454 0.84 -2.1
1,642,778 + Psyr_1454 0.84 +1.4
1,642,778 + Psyr_1454 0.84 -0.9
1,642,779 - Psyr_1454 0.85 +0.3
1,642,779 - Psyr_1454 0.85 -0.1
1,642,779 - Psyr_1454 0.85 -1.0
1,642,779 - Psyr_1454 0.85 -1.1
1,642,779 - Psyr_1454 0.85 -0.8
1,642,880 + Psyr_1454 0.89 -1.4
1,642,880 + Psyr_1454 0.89 -1.3
1,642,880 + Psyr_1454 0.89 +0.1
1,642,945 + -1.6
1,642,945 + -1.6
1,642,946 - -1.8
1,642,996 - -0.7
1,642,996 - -1.1
1,643,051 + -1.6
1,643,051 + -0.3
1,643,051 + -1.2
1,643,051 + -0.3
1,643,051 + -1.8
1,643,052 - -0.0
1,643,052 - +0.9
1,643,060 + +0.8
1,643,060 + +1.6
1,643,060 + +0.4
1,643,061 - -1.6
1,643,061 - -3.6
1,643,061 - +1.4
1,643,061 - +0.4
1,643,068 + +1.5
1,643,069 - +2.0
1,643,125 + +0.2
1,643,125 + +1.4
1,643,126 - +3.0
1,643,323 - Psyr_1455 0.39 +0.2
1,643,451 + Psyr_1455 0.64 +1.3
1,643,452 - Psyr_1455 0.65 -2.3
1,643,452 - Psyr_1455 0.65 -0.8
1,643,452 - Psyr_1455 0.65 +1.7
1,643,519 - Psyr_1455 0.78 +0.1
1,643,522 - Psyr_1455 0.79 +0.7
1,643,522 - Psyr_1455 0.79 -0.5
1,643,522 - Psyr_1455 0.79 -0.2
1,643,522 - Psyr_1455 0.79 +0.9
1,643,585 + -0.2
1,643,585 + -0.9
1,643,585 + +1.2
1,643,585 + -1.7
1,643,585 + -0.2
1,643,586 - -1.7
1,643,586 - +0.7
1,643,586 - -0.9
1,643,586 - -1.6
1,643,586 - -0.7
1,643,695 - Psyr_1456 0.12 -0.5
1,643,795 + Psyr_1456 0.30 -0.2
1,643,795 + Psyr_1456 0.30 -3.3
1,643,795 + Psyr_1456 0.30 -0.2
1,643,796 - Psyr_1456 0.30 -0.3
1,643,796 - Psyr_1456 0.30 +4.4
1,643,796 - Psyr_1456 0.30 -0.4
1,643,796 - Psyr_1456 0.30 +0.9
1,643,796 - Psyr_1456 0.30 +3.0
1,643,812 - Psyr_1456 0.33 -0.9
1,643,929 + Psyr_1456 0.54 -0.9
1,643,930 - Psyr_1456 0.54 +1.7
1,643,930 - Psyr_1456 0.54 -1.8
1,643,930 - Psyr_1456 0.54 +1.6
1,643,930 - Psyr_1456 0.54 -0.4
1,643,930 - Psyr_1456 0.54 -0.6
1,643,930 - Psyr_1456 0.54 +0.6
1,643,930 - Psyr_1456 0.54 +1.2
1,643,930 - Psyr_1456 0.54 -1.4
1,643,930 - Psyr_1456 0.54 -2.1
1,643,930 - Psyr_1456 0.54 -2.3
1,643,930 - Psyr_1456 0.54 +1.5
1,643,930 - Psyr_1456 0.54 +0.1
1,643,971 + Psyr_1456 0.62 +0.3
1,643,971 + Psyr_1456 0.62 +0.2
1,643,971 + Psyr_1456 0.62 +1.1
1,643,971 + Psyr_1456 0.62 +0.1
1,643,971 + Psyr_1456 0.62 -0.3
1,643,971 + Psyr_1456 0.62 +0.7
1,643,972 - Psyr_1456 0.62 +0.4
1,643,972 - Psyr_1456 0.62 -1.0
1,643,972 - Psyr_1456 0.62 -1.4
1,643,972 - Psyr_1456 0.62 +1.7
1,643,972 - Psyr_1456 0.62 +1.6
1,644,055 - Psyr_1456 0.77 -0.6
1,644,359 + Psyr_1457 0.25 -1.8
1,644,359 + Psyr_1457 0.25 +0.3
1,644,359 + Psyr_1457 0.25 -0.5
1,644,359 + Psyr_1457 0.25 +0.9
1,644,359 + Psyr_1457 0.25 +0.1
1,644,359 + Psyr_1457 0.25 -2.3
1,644,359 + Psyr_1457 0.25 +0.5
1,644,360 - Psyr_1457 0.26 -0.9
1,644,360 - Psyr_1457 0.26 -1.4
1,644,360 - Psyr_1457 0.26 +0.4
1,644,360 - Psyr_1457 0.26 -2.0
1,644,360 - Psyr_1457 0.26 -1.8
1,644,360 - Psyr_1457 0.26 +2.8
1,644,360 - Psyr_1457 0.26 -4.0
1,644,360 - Psyr_1457 0.26 -0.5
1,644,360 - Psyr_1457 0.26 -1.0
1,644,545 + Psyr_1457 0.50 +1.0
1,644,546 - Psyr_1457 0.50 +0.1
1,644,546 - Psyr_1457 0.50 +0.4
1,644,546 - Psyr_1457 0.50 +0.1
1,644,557 + Psyr_1457 0.52 +0.3
1,644,558 - Psyr_1457 0.52 -0.1
1,644,680 + Psyr_1457 0.68 +0.7
1,644,681 - Psyr_1457 0.69 +0.0
1,644,681 - Psyr_1457 0.69 +1.0
1,644,905 + -1.5
1,644,906 - +0.4
1,644,906 - -0.9
1,644,925 + +1.5
1,645,035 + Psyr_1458 0.16 -0.6
1,645,036 - Psyr_1458 0.16 -0.0
1,645,105 + Psyr_1458 0.25 +2.1
1,645,106 - Psyr_1458 0.26 -0.7

Or see this region's nucleotide sequence