Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0304

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0303 and Psyr_0304 are separated by 208 nucleotidesPsyr_0304 and Psyr_0305 are separated by 0 nucleotides Psyr_0303: Psyr_0303 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein, at 323,173 to 324,141 _0303 Psyr_0304: Psyr_0304 - ChaC-like protein, at 324,350 to 325,018 _0304 Psyr_0305: Psyr_0305 - GlpT transporter:Glycerol-3-phosphate transporter, at 325,019 to 326,368 _0305 Position (kb) 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.367 kb on + strand, within Psyr_0303at 323.551 kb on + strand, within Psyr_0303at 323.849 kb on - strand, within Psyr_0303at 323.879 kb on - strand, within Psyr_0303at 324.055 kb on + strandat 324.055 kb on + strandat 324.056 kb on - strandat 324.056 kb on - strandat 324.116 kb on + strandat 324.116 kb on + strandat 324.117 kb on - strandat 324.172 kb on + strandat 324.173 kb on - strandat 324.190 kb on + strandat 324.190 kb on + strandat 324.191 kb on - strandat 324.191 kb on - strandat 324.230 kb on + strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.231 kb on - strandat 324.515 kb on + strand, within Psyr_0304at 324.596 kb on + strand, within Psyr_0304at 324.597 kb on - strand, within Psyr_0304at 324.645 kb on + strand, within Psyr_0304at 324.804 kb on + strand, within Psyr_0304at 324.805 kb on - strand, within Psyr_0304at 324.845 kb on + strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 324.846 kb on - strand, within Psyr_0304at 325.192 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.285 kb on - strand, within Psyr_0305at 325.353 kb on + strand, within Psyr_0305at 325.353 kb on + strand, within Psyr_0305at 325.354 kb on - strand, within Psyr_0305at 325.354 kb on - strand, within Psyr_0305at 325.485 kb on + strand, within Psyr_0305at 325.485 kb on + strand, within Psyr_0305at 325.486 kb on - strand, within Psyr_0305at 325.486 kb on - strand, within Psyr_0305at 325.534 kb on - strand, within Psyr_0305at 325.572 kb on + strand, within Psyr_0305at 325.572 kb on + strand, within Psyr_0305at 325.573 kb on - strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.599 kb on + strand, within Psyr_0305at 325.600 kb on - strand, within Psyr_0305at 325.600 kb on - strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.626 kb on + strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.627 kb on - strand, within Psyr_0305at 325.678 kb on - strand, within Psyr_0305at 325.701 kb on + strand, within Psyr_0305at 325.701 kb on + strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.702 kb on - strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.797 kb on + strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305at 325.798 kb on - strand, within Psyr_0305

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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323,367 + Psyr_0303 0.20 -2.2
323,551 + Psyr_0303 0.39 +1.4
323,849 - Psyr_0303 0.70 -0.9
323,879 - Psyr_0303 0.73 -1.7
324,055 + -0.4
324,055 + +0.4
324,056 - -1.8
324,056 - -0.2
324,116 + +2.4
324,116 + +1.0
324,117 - -2.4
324,172 + -0.4
324,173 - -0.8
324,190 + +0.5
324,190 + -1.3
324,191 - -1.1
324,191 - -0.2
324,230 + +1.4
324,231 - +0.4
324,231 - -1.1
324,231 - +0.6
324,231 - -0.2
324,231 - -0.9
324,515 + Psyr_0304 0.25 -1.5
324,596 + Psyr_0304 0.37 -0.4
324,597 - Psyr_0304 0.37 -0.1
324,645 + Psyr_0304 0.44 -2.2
324,804 + Psyr_0304 0.68 +0.1
324,805 - Psyr_0304 0.68 -0.7
324,845 + Psyr_0304 0.74 -1.6
324,846 - Psyr_0304 0.74 -0.7
324,846 - Psyr_0304 0.74 -0.3
324,846 - Psyr_0304 0.74 +0.4
324,846 - Psyr_0304 0.74 -3.3
325,192 - Psyr_0305 0.13 -0.0
325,285 - Psyr_0305 0.20 -1.0
325,285 - Psyr_0305 0.20 -0.7
325,285 - Psyr_0305 0.20 -1.0
325,285 - Psyr_0305 0.20 +0.1
325,353 + Psyr_0305 0.25 +1.0
325,353 + Psyr_0305 0.25 -0.0
325,354 - Psyr_0305 0.25 -2.6
325,354 - Psyr_0305 0.25 -1.1
325,485 + Psyr_0305 0.35 -0.4
325,485 + Psyr_0305 0.35 -0.3
325,486 - Psyr_0305 0.35 -0.9
325,486 - Psyr_0305 0.35 -0.8
325,534 - Psyr_0305 0.38 +0.3
325,572 + Psyr_0305 0.41 +0.6
325,572 + Psyr_0305 0.41 -0.1
325,573 - Psyr_0305 0.41 -0.2
325,599 + Psyr_0305 0.43 +0.7
325,599 + Psyr_0305 0.43 -0.4
325,599 + Psyr_0305 0.43 +1.2
325,599 + Psyr_0305 0.43 +0.9
325,600 - Psyr_0305 0.43 +0.8
325,600 - Psyr_0305 0.43 -0.2
325,626 + Psyr_0305 0.45 +0.6
325,626 + Psyr_0305 0.45 -0.1
325,626 + Psyr_0305 0.45 +0.0
325,626 + Psyr_0305 0.45 -1.8
325,627 - Psyr_0305 0.45 +2.2
325,627 - Psyr_0305 0.45 -1.1
325,627 - Psyr_0305 0.45 +2.4
325,627 - Psyr_0305 0.45 -0.2
325,627 - Psyr_0305 0.45 -3.2
325,627 - Psyr_0305 0.45 +0.1
325,678 - Psyr_0305 0.49 -1.2
325,701 + Psyr_0305 0.51 +0.6
325,701 + Psyr_0305 0.51 +0.3
325,702 - Psyr_0305 0.51 -0.2
325,702 - Psyr_0305 0.51 +0.3
325,702 - Psyr_0305 0.51 -1.5
325,702 - Psyr_0305 0.51 +1.6
325,797 + Psyr_0305 0.58 -0.8
325,797 + Psyr_0305 0.58 -0.1
325,797 + Psyr_0305 0.58 +0.5
325,797 + Psyr_0305 0.58 +0.8
325,798 - Psyr_0305 0.58 +0.5
325,798 - Psyr_0305 0.58 +0.8
325,798 - Psyr_0305 0.58 -0.1
325,798 - Psyr_0305 0.58 +1.0

Or see this region's nucleotide sequence