Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15225 and BWI76_RS15230 are separated by 1 nucleotides BWI76_RS15230 and BWI76_RS15235 overlap by 8 nucleotides BWI76_RS15235 and BWI76_RS15240 are separated by 176 nucleotides
BWI76_RS15225: BWI76_RS15225 - DeoR family transcriptional regulator, at 3,191,051 to 3,191,812
_RS15225
BWI76_RS15230: BWI76_RS15230 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,191,814 to 3,192,800
_RS15230
BWI76_RS15235: BWI76_RS15235 - hypothetical protein, at 3,192,793 to 3,194,031
_RS15235
BWI76_RS15240: BWI76_RS15240 - alcohol dehydrogenase, at 3,194,208 to 3,195,353
_RS15240
Position (kb)
3192
3193
3194
3195 Strain fitness (log2 ratio)
-1
0
1 at 3191.848 kb on - strand at 3191.851 kb on - strand at 3192.218 kb on + strand, within BWI76_RS15230 at 3192.243 kb on - strand, within BWI76_RS15230 at 3192.280 kb on + strand, within BWI76_RS15230 at 3192.316 kb on + strand, within BWI76_RS15230 at 3192.592 kb on + strand, within BWI76_RS15230 at 3192.728 kb on - strand at 3192.837 kb on - strand at 3193.545 kb on + strand, within BWI76_RS15235 at 3193.586 kb on + strand, within BWI76_RS15235 at 3193.808 kb on - strand, within BWI76_RS15235 at 3194.018 kb on - strand at 3194.366 kb on - strand, within BWI76_RS15240 at 3194.389 kb on - strand, within BWI76_RS15240 at 3194.419 kb on - strand, within BWI76_RS15240 at 3194.522 kb on - strand, within BWI76_RS15240 at 3194.658 kb on - strand, within BWI76_RS15240
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF remove 3,191,848 - -0.4 3,191,851 - -0.5 3,192,218 + BWI76_RS15230 0.41 -0.9 3,192,243 - BWI76_RS15230 0.43 +0.4 3,192,280 + BWI76_RS15230 0.47 -0.4 3,192,316 + BWI76_RS15230 0.51 -1.0 3,192,592 + BWI76_RS15230 0.79 +0.0 3,192,728 - -0.2 3,192,837 - -0.1 3,193,545 + BWI76_RS15235 0.61 -1.5 3,193,586 + BWI76_RS15235 0.64 -1.1 3,193,808 - BWI76_RS15235 0.82 -0.1 3,194,018 - +0.2 3,194,366 - BWI76_RS15240 0.14 -0.4 3,194,389 - BWI76_RS15240 0.16 +0.1 3,194,419 - BWI76_RS15240 0.18 +0.3 3,194,522 - BWI76_RS15240 0.27 -0.1 3,194,658 - BWI76_RS15240 0.39 -0.5
Or see this region's nucleotide sequence