Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14725

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14715 and BWI76_RS14720 overlap by 20 nucleotidesBWI76_RS14720 and BWI76_RS14725 are separated by 87 nucleotidesBWI76_RS14725 and BWI76_RS14730 are separated by 61 nucleotidesBWI76_RS14730 and BWI76_RS14735 are separated by 112 nucleotides BWI76_RS14715: BWI76_RS14715 - type I methionyl aminopeptidase, at 3,090,332 to 3,091,111 _RS14715 BWI76_RS14720: BWI76_RS14720 - hypothetical protein, at 3,091,092 to 3,091,310 _RS14720 BWI76_RS14725: BWI76_RS14725 - HxlR family transcriptional regulator, at 3,091,398 to 3,091,865 _RS14725 BWI76_RS14730: BWI76_RS14730 - 4-oxalocrotonate tautomerase, at 3,091,927 to 3,092,163 _RS14730 BWI76_RS14735: BWI76_RS14735 - type 11 methyltransferase, at 3,092,276 to 3,092,944 _RS14735 Position (kb) 3091 3092Strain fitness (log2 ratio) -1 0 1 2 3at 3090.516 kb on - strand, within BWI76_RS14715at 3090.652 kb on - strand, within BWI76_RS14715at 3090.693 kb on + strand, within BWI76_RS14715at 3091.003 kb on - strand, within BWI76_RS14715at 3091.020 kb on - strand, within BWI76_RS14715at 3091.412 kb on + strandat 3091.412 kb on + strandat 3091.420 kb on - strandat 3091.420 kb on - strandat 3091.420 kb on - strandat 3091.420 kb on - strandat 3091.496 kb on - strand, within BWI76_RS14725at 3091.642 kb on - strand, within BWI76_RS14725at 3091.752 kb on + strand, within BWI76_RS14725at 3091.752 kb on + strand, within BWI76_RS14725at 3091.760 kb on - strand, within BWI76_RS14725at 3091.942 kb on + strandat 3092.064 kb on - strand, within BWI76_RS14730at 3092.066 kb on + strand, within BWI76_RS14730at 3092.068 kb on - strand, within BWI76_RS14730at 3092.081 kb on + strand, within BWI76_RS14730at 3092.112 kb on + strand, within BWI76_RS14730at 3092.120 kb on - strand, within BWI76_RS14730at 3092.217 kb on - strandat 3092.288 kb on + strandat 3092.296 kb on - strandat 3092.318 kb on - strandat 3092.610 kb on + strand, within BWI76_RS14735at 3092.753 kb on - strand, within BWI76_RS14735at 3092.782 kb on - strand, within BWI76_RS14735

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
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3,090,516 - BWI76_RS14715 0.24 +0.4
3,090,652 - BWI76_RS14715 0.41 +0.6
3,090,693 + BWI76_RS14715 0.46 -0.0
3,091,003 - BWI76_RS14715 0.86 +1.0
3,091,020 - BWI76_RS14715 0.88 -0.4
3,091,412 + +0.6
3,091,412 + -0.1
3,091,420 - +1.0
3,091,420 - -0.6
3,091,420 - -0.4
3,091,420 - +0.5
3,091,496 - BWI76_RS14725 0.21 +3.0
3,091,642 - BWI76_RS14725 0.52 +0.1
3,091,752 + BWI76_RS14725 0.76 +0.3
3,091,752 + BWI76_RS14725 0.76 +0.3
3,091,760 - BWI76_RS14725 0.77 +0.3
3,091,942 + +0.0
3,092,064 - BWI76_RS14730 0.58 -0.2
3,092,066 + BWI76_RS14730 0.59 +0.1
3,092,068 - BWI76_RS14730 0.59 +0.2
3,092,081 + BWI76_RS14730 0.65 -0.4
3,092,112 + BWI76_RS14730 0.78 +0.5
3,092,120 - BWI76_RS14730 0.81 +0.6
3,092,217 - -0.1
3,092,288 + -0.3
3,092,296 - -0.5
3,092,318 - -0.0
3,092,610 + BWI76_RS14735 0.50 -0.2
3,092,753 - BWI76_RS14735 0.71 +0.2
3,092,782 - BWI76_RS14735 0.76 -0.6

Or see this region's nucleotide sequence