Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10325

Experiment: RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10320 and BWI76_RS10325 are separated by 199 nucleotidesBWI76_RS10325 and BWI76_RS10330 are separated by 186 nucleotidesBWI76_RS10330 and BWI76_RS10335 are separated by 148 nucleotides BWI76_RS10320: BWI76_RS10320 - alpha-glucosidase/alpha-galactosidase, at 2,184,946 to 2,186,253 _RS10320 BWI76_RS10325: BWI76_RS10325 - AraC family transcriptional regulator, at 2,186,453 to 2,187,292 _RS10325 BWI76_RS10330: BWI76_RS10330 - TetR family transcriptional regulator, at 2,187,479 to 2,188,093 _RS10330 BWI76_RS10335: BWI76_RS10335 - tyrosine permease, at 2,188,242 to 2,189,405 _RS10335 Position (kb) 2186 2187 2188Strain fitness (log2 ratio) -1 0 1 2 3at 2185.475 kb on + strand, within BWI76_RS10320at 2185.547 kb on + strand, within BWI76_RS10320at 2185.569 kb on + strand, within BWI76_RS10320at 2185.710 kb on + strand, within BWI76_RS10320at 2185.730 kb on - strand, within BWI76_RS10320at 2185.796 kb on + strand, within BWI76_RS10320at 2185.868 kb on - strand, within BWI76_RS10320at 2186.156 kb on + strandat 2186.159 kb on - strandat 2186.183 kb on + strandat 2186.403 kb on - strandat 2186.469 kb on + strandat 2186.647 kb on - strand, within BWI76_RS10325at 2186.723 kb on - strand, within BWI76_RS10325at 2186.939 kb on - strand, within BWI76_RS10325at 2186.960 kb on - strand, within BWI76_RS10325at 2187.013 kb on - strand, within BWI76_RS10325at 2187.013 kb on - strand, within BWI76_RS10325at 2187.042 kb on - strand, within BWI76_RS10325at 2187.067 kb on + strand, within BWI76_RS10325at 2187.067 kb on + strand, within BWI76_RS10325at 2187.075 kb on + strand, within BWI76_RS10325at 2187.090 kb on - strand, within BWI76_RS10325at 2187.131 kb on - strand, within BWI76_RS10325at 2187.187 kb on - strand, within BWI76_RS10325at 2187.187 kb on - strand, within BWI76_RS10325at 2187.242 kb on - strandat 2187.305 kb on + strandat 2187.337 kb on + strandat 2187.348 kb on + strandat 2187.464 kb on + strandat 2187.470 kb on + strandat 2187.514 kb on - strandat 2187.691 kb on + strand, within BWI76_RS10330at 2187.781 kb on + strand, within BWI76_RS10330at 2187.815 kb on + strand, within BWI76_RS10330at 2188.000 kb on + strand, within BWI76_RS10330at 2188.079 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.142 kb on + strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.150 kb on - strandat 2188.234 kb on + strandat 2188.242 kb on - strandat 2188.270 kb on + strandat 2188.270 kb on + strandat 2188.273 kb on - strandat 2188.275 kb on + strandat 2188.278 kb on - strandat 2188.278 kb on - strandat 2188.278 kb on - strandat 2188.283 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in Eppendorf tube with 0.1 mM glass beads, cultured with Sinorhizobium meliloti and Methylobacterium sp. UNC378MF
remove
2,185,475 + BWI76_RS10320 0.40 -0.6
2,185,547 + BWI76_RS10320 0.46 -0.1
2,185,569 + BWI76_RS10320 0.48 -0.1
2,185,710 + BWI76_RS10320 0.58 -0.5
2,185,730 - BWI76_RS10320 0.60 -0.4
2,185,796 + BWI76_RS10320 0.65 +0.3
2,185,868 - BWI76_RS10320 0.70 -0.7
2,186,156 + +0.2
2,186,159 - -0.6
2,186,183 + -0.8
2,186,403 - +0.2
2,186,469 + -0.2
2,186,647 - BWI76_RS10325 0.23 +2.9
2,186,723 - BWI76_RS10325 0.32 -0.2
2,186,939 - BWI76_RS10325 0.58 +0.1
2,186,960 - BWI76_RS10325 0.60 +2.1
2,187,013 - BWI76_RS10325 0.67 +0.5
2,187,013 - BWI76_RS10325 0.67 -0.3
2,187,042 - BWI76_RS10325 0.70 -0.3
2,187,067 + BWI76_RS10325 0.73 +0.2
2,187,067 + BWI76_RS10325 0.73 +0.0
2,187,075 + BWI76_RS10325 0.74 +0.8
2,187,090 - BWI76_RS10325 0.76 -0.6
2,187,131 - BWI76_RS10325 0.81 -0.1
2,187,187 - BWI76_RS10325 0.87 +0.8
2,187,187 - BWI76_RS10325 0.87 +0.8
2,187,242 - -0.1
2,187,305 + -0.2
2,187,337 + -0.1
2,187,348 + -0.3
2,187,464 + +1.1
2,187,470 + +0.0
2,187,514 - +0.4
2,187,691 + BWI76_RS10330 0.34 -0.4
2,187,781 + BWI76_RS10330 0.49 +0.4
2,187,815 + BWI76_RS10330 0.55 -0.3
2,188,000 + BWI76_RS10330 0.85 +0.8
2,188,079 + -0.1
2,188,142 + -1.4
2,188,142 + -0.2
2,188,142 + +0.5
2,188,142 + +0.3
2,188,142 + -0.2
2,188,142 + -0.6
2,188,150 - -0.4
2,188,150 - -0.6
2,188,150 - -1.1
2,188,150 - -0.5
2,188,150 - +0.2
2,188,234 + +0.4
2,188,242 - -0.0
2,188,270 + +0.2
2,188,270 + -0.0
2,188,273 - +0.1
2,188,275 + -0.4
2,188,278 - -0.4
2,188,278 - +0.2
2,188,278 - -1.0
2,188,283 - +0.4

Or see this region's nucleotide sequence