Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00554 and SMc00555 are separated by 146 nucleotides SMc00555 and SMc00556 are separated by 68 nucleotides
SMc00554: SMc00554 - amidophosphoribosyltransferase, at 1,223,663 to 1,225,153
SMc00554
SMc00555: SMc00555 - colicin V production transmembrane protein, at 1,225,300 to 1,225,899
SMc00555
SMc00556: SMc00556 - DNA repair protein RadA, at 1,225,968 to 1,227,431
SMc00556
Position (kb)
1225
1226 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1224.309 kb on + strand, within SMc00554 at 1224.310 kb on - strand, within SMc00554 at 1224.351 kb on + strand, within SMc00554 at 1224.351 kb on + strand, within SMc00554 at 1224.357 kb on + strand, within SMc00554 at 1224.358 kb on - strand, within SMc00554 at 1224.875 kb on + strand, within SMc00554 at 1224.875 kb on + strand, within SMc00554 at 1224.875 kb on + strand, within SMc00554 at 1224.875 kb on + strand, within SMc00554 at 1224.875 kb on + strand, within SMc00554 at 1224.876 kb on - strand, within SMc00554 at 1224.876 kb on - strand, within SMc00554 at 1224.876 kb on - strand, within SMc00554 at 1224.876 kb on - strand, within SMc00554 at 1224.876 kb on - strand, within SMc00554 at 1224.876 kb on - strand, within SMc00554 at 1224.930 kb on + strand, within SMc00554 at 1224.966 kb on + strand, within SMc00554 at 1225.277 kb on + strand at 1225.384 kb on - strand, within SMc00555 at 1225.962 kb on - strand at 1226.308 kb on + strand, within SMc00556 at 1226.659 kb on + strand, within SMc00556
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,224,309 + SMc00554 0.43 -0.4 1,224,310 - SMc00554 0.43 -0.8 1,224,351 + SMc00554 0.46 -1.2 1,224,351 + SMc00554 0.46 -3.1 1,224,357 + SMc00554 0.47 -0.8 1,224,358 - SMc00554 0.47 -2.3 1,224,875 + SMc00554 0.81 -2.8 1,224,875 + SMc00554 0.81 -2.5 1,224,875 + SMc00554 0.81 -3.9 1,224,875 + SMc00554 0.81 -2.8 1,224,875 + SMc00554 0.81 -1.8 1,224,876 - SMc00554 0.81 -3.2 1,224,876 - SMc00554 0.81 -0.4 1,224,876 - SMc00554 0.81 -6.1 1,224,876 - SMc00554 0.81 -4.1 1,224,876 - SMc00554 0.81 -4.9 1,224,876 - SMc00554 0.81 -3.1 1,224,930 + SMc00554 0.85 -4.1 1,224,966 + SMc00554 0.87 -1.4 1,225,277 + -0.1 1,225,384 - SMc00555 0.14 -0.8 1,225,962 - -0.7 1,226,308 + SMc00556 0.23 -0.4 1,226,659 + SMc00556 0.47 -1.2
Or see this region's nucleotide sequence