Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00506 and SMc00505 are separated by 161 nucleotides SMc00505 and SMc00504 are separated by 26 nucleotides SMc00504 and SMc00503 are separated by 112 nucleotides SMc00503 and SMc00502 overlap by 4 nucleotides
SMc00506: SMc00506 - hypothetical protein, at 1,905,845 to 1,906,654
SMc00506
SMc00505: SMc00505 - hypothetical protein, at 1,906,816 to 1,907,370
SMc00505
SMc00504: SMc00504 - transcriptional regulator, at 1,907,397 to 1,908,635
SMc00504
SMc00503: SMc00503 - hypothetical protein, at 1,908,748 to 1,909,482
SMc00503
SMc00502: SMc00502 - hypothetical protein, at 1,909,479 to 1,910,153
SMc00502
Position (kb)
1907
1908
1909 Strain fitness (log2 ratio)
-2
-1
0
1 at 1906.500 kb on + strand, within SMc00506 at 1906.501 kb on - strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.502 kb on + strand, within SMc00506 at 1906.503 kb on - strand, within SMc00506 at 1906.503 kb on - strand, within SMc00506 at 1906.503 kb on - strand, within SMc00506 at 1906.599 kb on - strand at 1906.745 kb on + strand at 1906.745 kb on + strand at 1907.156 kb on - strand, within SMc00505 at 1907.222 kb on - strand, within SMc00505 at 1907.368 kb on + strand at 1907.489 kb on + strand at 1907.490 kb on - strand at 1907.935 kb on + strand, within SMc00504 at 1907.935 kb on + strand, within SMc00504 at 1907.936 kb on - strand, within SMc00504 at 1907.936 kb on - strand, within SMc00504 at 1907.982 kb on - strand, within SMc00504 at 1908.141 kb on + strand, within SMc00504 at 1908.177 kb on - strand, within SMc00504 at 1908.195 kb on - strand, within SMc00504 at 1908.266 kb on + strand, within SMc00504 at 1908.469 kb on + strand, within SMc00504 at 1908.469 kb on + strand, within SMc00504 at 1908.688 kb on - strand at 1908.691 kb on - strand at 1908.747 kb on + strand at 1908.841 kb on + strand, within SMc00503 at 1908.841 kb on + strand, within SMc00503 at 1908.841 kb on + strand, within SMc00503 at 1908.842 kb on - strand, within SMc00503 at 1908.842 kb on - strand, within SMc00503 at 1908.842 kb on - strand, within SMc00503 at 1908.987 kb on + strand, within SMc00503 at 1908.987 kb on + strand, within SMc00503 at 1908.988 kb on - strand, within SMc00503 at 1908.997 kb on + strand, within SMc00503 at 1908.997 kb on + strand, within SMc00503 at 1908.998 kb on - strand, within SMc00503 at 1908.998 kb on - strand, within SMc00503 at 1908.998 kb on - strand, within SMc00503 at 1908.998 kb on - strand, within SMc00503 at 1909.012 kb on + strand, within SMc00503 at 1909.013 kb on - strand, within SMc00503 at 1909.013 kb on - strand, within SMc00503 at 1909.111 kb on + strand, within SMc00503 at 1909.199 kb on + strand, within SMc00503 at 1909.351 kb on + strand, within SMc00503 at 1909.414 kb on + strand at 1909.414 kb on + strand at 1909.414 kb on + strand at 1909.514 kb on + strand at 1909.515 kb on - strand at 1909.515 kb on - strand at 1909.596 kb on + strand, within SMc00502 at 1909.596 kb on + strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.598 kb on + strand, within SMc00502 at 1909.598 kb on + strand, within SMc00502 at 1909.599 kb on - strand, within SMc00502
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,906,500 + SMc00506 0.81 -0.1 1,906,501 - SMc00506 0.81 -0.1 1,906,502 + SMc00506 0.81 +0.1 1,906,502 + SMc00506 0.81 +1.0 1,906,502 + SMc00506 0.81 +0.1 1,906,502 + SMc00506 0.81 +0.4 1,906,502 + SMc00506 0.81 +0.1 1,906,503 - SMc00506 0.81 -0.4 1,906,503 - SMc00506 0.81 -0.1 1,906,503 - SMc00506 0.81 -0.6 1,906,599 - -0.7 1,906,745 + -0.8 1,906,745 + -0.3 1,907,156 - SMc00505 0.61 -0.4 1,907,222 - SMc00505 0.73 +0.4 1,907,368 + +0.2 1,907,489 + -0.7 1,907,490 - -0.8 1,907,935 + SMc00504 0.43 -0.1 1,907,935 + SMc00504 0.43 -0.0 1,907,936 - SMc00504 0.44 -0.5 1,907,936 - SMc00504 0.44 -0.9 1,907,982 - SMc00504 0.47 -0.5 1,908,141 + SMc00504 0.60 -1.0 1,908,177 - SMc00504 0.63 -0.9 1,908,195 - SMc00504 0.64 -1.1 1,908,266 + SMc00504 0.70 +0.2 1,908,469 + SMc00504 0.87 -0.1 1,908,469 + SMc00504 0.87 -1.9 1,908,688 - +0.0 1,908,691 - -0.2 1,908,747 + -0.4 1,908,841 + SMc00503 0.13 +0.8 1,908,841 + SMc00503 0.13 -0.0 1,908,841 + SMc00503 0.13 +0.0 1,908,842 - SMc00503 0.13 -0.2 1,908,842 - SMc00503 0.13 -0.4 1,908,842 - SMc00503 0.13 +1.3 1,908,987 + SMc00503 0.33 +0.1 1,908,987 + SMc00503 0.33 -1.8 1,908,988 - SMc00503 0.33 -0.2 1,908,997 + SMc00503 0.34 +0.2 1,908,997 + SMc00503 0.34 +0.1 1,908,998 - SMc00503 0.34 -0.2 1,908,998 - SMc00503 0.34 -0.8 1,908,998 - SMc00503 0.34 -0.3 1,908,998 - SMc00503 0.34 +0.0 1,909,012 + SMc00503 0.36 -0.6 1,909,013 - SMc00503 0.36 +0.5 1,909,013 - SMc00503 0.36 -0.8 1,909,111 + SMc00503 0.49 +1.5 1,909,199 + SMc00503 0.61 +0.3 1,909,351 + SMc00503 0.82 -0.2 1,909,414 + -0.2 1,909,414 + -1.8 1,909,414 + -1.2 1,909,514 + -0.4 1,909,515 - +0.0 1,909,515 - -0.4 1,909,596 + SMc00502 0.17 -0.1 1,909,596 + SMc00502 0.17 +0.1 1,909,597 - SMc00502 0.17 -0.6 1,909,597 - SMc00502 0.17 -0.9 1,909,597 - SMc00502 0.17 -0.2 1,909,597 - SMc00502 0.17 +0.0 1,909,597 - SMc00502 0.17 +0.2 1,909,598 + SMc00502 0.18 -1.0 1,909,598 + SMc00502 0.18 +0.0 1,909,599 - SMc00502 0.18 +0.0
Or see this region's nucleotide sequence