Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0113 and SMa0114 are separated by 27 nucleotides SMa0114 and SMa0116 are separated by 545 nucleotides
SMa0113: SMa0113 - Sensor histidine kinase, at 59,703 to 62,264
SMa0113
SMa0114: SMa0114 - two-component response regulator, at 62,292 to 62,654
SMa0114
SMa0116: SMa0116 - DnaJ/CbpA-type protein, at 63,200 to 64,117
SMa0116
Position (kb) 62
63 Strain fitness (log2 ratio) -1
0
1
2 at 61.364 kb on - strand, within SMa0113 at 61.364 kb on - strand, within SMa0113 at 61.364 kb on - strand, within SMa0113 at 61.400 kb on + strand, within SMa0113 at 61.401 kb on - strand, within SMa0113 at 61.425 kb on + strand, within SMa0113 at 61.457 kb on - strand, within SMa0113 at 61.457 kb on - strand, within SMa0113 at 61.457 kb on - strand, within SMa0113 at 61.540 kb on - strand, within SMa0113 at 61.540 kb on - strand, within SMa0113 at 61.549 kb on + strand, within SMa0113 at 61.550 kb on - strand, within SMa0113 at 61.550 kb on - strand, within SMa0113 at 61.553 kb on + strand, within SMa0113 at 61.653 kb on - strand, within SMa0113 at 61.772 kb on - strand, within SMa0113 at 61.772 kb on - strand, within SMa0113 at 61.841 kb on + strand, within SMa0113 at 61.841 kb on + strand, within SMa0113 at 61.842 kb on - strand, within SMa0113 at 62.087 kb on - strand at 62.101 kb on + strand at 62.101 kb on + strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.360 kb on + strand, within SMa0114 at 62.360 kb on + strand, within SMa0114 at 62.361 kb on - strand, within SMa0114 at 62.361 kb on - strand, within SMa0114 at 62.361 kb on - strand, within SMa0114 at 62.365 kb on + strand, within SMa0114 at 62.366 kb on - strand, within SMa0114 at 62.564 kb on + strand, within SMa0114 at 62.565 kb on - strand, within SMa0114 at 62.565 kb on - strand, within SMa0114 at 62.565 kb on - strand, within SMa0114 at 62.571 kb on + strand, within SMa0114 at 62.571 kb on + strand, within SMa0114 at 62.572 kb on - strand, within SMa0114 at 62.572 kb on - strand, within SMa0114 at 62.626 kb on + strand at 62.627 kb on - strand at 62.758 kb on - strand at 62.758 kb on - strand at 62.789 kb on + strand at 62.789 kb on + strand at 62.789 kb on + strand at 62.790 kb on - strand at 62.790 kb on - strand at 62.864 kb on - strand at 62.864 kb on - strand at 62.868 kb on + strand at 62.868 kb on + strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.869 kb on - strand at 62.876 kb on - strand at 62.996 kb on - strand at 62.997 kb on + strand at 63.019 kb on + strand at 63.019 kb on + strand at 63.020 kb on - strand at 63.046 kb on + strand at 63.121 kb on + strand at 63.127 kb on - strand at 63.180 kb on + strand at 63.216 kb on - strand at 63.223 kb on - strand at 63.239 kb on - strand at 63.269 kb on + strand at 63.269 kb on + strand at 63.356 kb on + strand, within SMa0116 at 63.455 kb on + strand, within SMa0116 at 63.597 kb on - strand, within SMa0116 at 63.597 kb on - strand at 63.597 kb on - strand, within SMa0116
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 61,364 - SMa0113 0.65 +0.8 61,364 - SMa0113 0.65 +0.8 61,364 - SMa0113 0.65 +1.0 61,400 + SMa0113 0.66 +0.3 61,401 - SMa0113 0.66 +0.8 61,425 + SMa0113 0.67 +1.1 61,457 - SMa0113 0.68 -1.0 61,457 - SMa0113 0.68 -0.2 61,457 - SMa0113 0.68 +0.9 61,540 - SMa0113 0.72 +1.2 61,540 - SMa0113 0.72 +0.5 61,549 + SMa0113 0.72 +0.4 61,550 - SMa0113 0.72 -0.1 61,550 - SMa0113 0.72 +0.2 61,553 + SMa0113 0.72 +0.4 61,653 - SMa0113 0.76 +0.7 61,772 - SMa0113 0.81 +0.3 61,772 - SMa0113 0.81 +1.8 61,841 + SMa0113 0.83 +0.9 61,841 + SMa0113 0.83 +1.0 61,842 - SMa0113 0.83 +0.6 62,087 - +1.0 62,101 + +0.5 62,101 + +0.3 62,102 - +1.2 62,102 - +0.7 62,360 + SMa0114 0.19 +0.6 62,360 + SMa0114 0.19 +0.3 62,361 - SMa0114 0.19 -0.4 62,361 - SMa0114 0.19 +0.4 62,361 - SMa0114 0.19 +0.6 62,365 + SMa0114 0.20 +0.6 62,366 - SMa0114 0.20 +0.0 62,564 + SMa0114 0.75 +0.4 62,565 - SMa0114 0.75 +0.3 62,565 - SMa0114 0.75 +0.6 62,565 - SMa0114 0.75 +0.4 62,571 + SMa0114 0.77 +0.6 62,571 + SMa0114 0.77 +0.6 62,572 - SMa0114 0.77 +0.2 62,572 - SMa0114 0.77 +0.6 62,626 + +0.9 62,627 - +0.5 62,758 - +1.8 62,758 - +0.3 62,789 + +0.6 62,789 + -0.4 62,789 + -0.6 62,790 - -0.2 62,790 - +0.4 62,864 - -0.7 62,864 - -0.0 62,868 + -0.3 62,868 + -0.4 62,869 - +0.6 62,869 - -0.3 62,869 - +0.0 62,869 - +1.8 62,869 - +0.3 62,876 - -0.3 62,996 - -0.2 62,997 + +0.7 63,019 + +0.3 63,019 + -0.4 63,020 - +0.0 63,046 + -0.1 63,121 + +0.2 63,127 - -0.2 63,180 + -0.1 63,216 - -0.6 63,223 - -0.5 63,239 - +0.1 63,269 + +0.6 63,269 + -0.7 63,356 + SMa0116 0.17 -0.1 63,455 + SMa0116 0.28 +0.6 63,597 - SMa0116 0.43 +0.6 63,597 - -1.0 63,597 - SMa0116 0.43 +0.8
Or see this region's nucleotide sequence