Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0050

Experiment: MoLS4 with L-Tryptophan (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0049 and motA-1 are separated by 11 nucleotidesmotA-1 and DVU0051 are separated by 275 nucleotides DVU0049: DVU0049 - OmpA family protein (TIGR), at 53,901 to 54,995 DVU0049 DVU0050: motA-1 - chemotaxis protein MotA (TIGR), at 55,007 to 55,765 motA-1 DVU0051: DVU0051 - conserved hypothetical protein TIGR00044 (TIGR), at 56,041 to 56,754 DVU0051 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2 3at 54.105 kb on - strand, within DVU0049at 54.274 kb on + strand, within DVU0049at 54.282 kb on - strand, within DVU0049at 54.290 kb on + strand, within DVU0049at 54.456 kb on + strand, within DVU0049at 54.464 kb on - strand, within DVU0049at 54.482 kb on + strand, within DVU0049at 54.503 kb on - strand, within DVU0049at 54.514 kb on + strand, within DVU0049at 54.543 kb on + strand, within DVU0049at 54.553 kb on - strand, within DVU0049at 54.563 kb on - strand, within DVU0049at 54.566 kb on + strand, within DVU0049at 54.596 kb on + strand, within DVU0049at 54.605 kb on + strand, within DVU0049at 54.614 kb on + strand, within DVU0049at 54.624 kb on + strand, within DVU0049at 54.646 kb on + strand, within DVU0049at 54.677 kb on + strand, within DVU0049at 54.685 kb on + strand, within DVU0049at 54.685 kb on + strand, within DVU0049at 54.693 kb on - strand, within DVU0049at 54.693 kb on - strand, within DVU0049at 54.707 kb on + strand, within DVU0049at 54.712 kb on + strand, within DVU0049at 54.730 kb on - strand, within DVU0049at 54.778 kb on - strand, within DVU0049at 54.809 kb on + strand, within DVU0049at 54.809 kb on + strand, within DVU0049at 54.817 kb on - strand, within DVU0049at 54.997 kb on - strandat 54.999 kb on + strandat 55.038 kb on + strandat 55.041 kb on - strandat 55.118 kb on + strand, within motA-1at 55.189 kb on - strand, within motA-1at 55.203 kb on - strand, within motA-1at 55.228 kb on - strand, within motA-1at 55.257 kb on + strand, within motA-1at 55.309 kb on + strand, within motA-1at 55.309 kb on + strand, within motA-1at 55.317 kb on - strand, within motA-1at 55.372 kb on + strand, within motA-1at 55.382 kb on + strand, within motA-1at 55.390 kb on - strand, within motA-1at 55.408 kb on + strand, within motA-1at 55.408 kb on + strand, within motA-1at 55.408 kb on + strand, within motA-1at 55.416 kb on - strand, within motA-1at 55.416 kb on - strand, within motA-1at 55.540 kb on + strand, within motA-1at 55.540 kb on - strand, within motA-1at 55.548 kb on - strand, within motA-1at 55.561 kb on - strand, within motA-1at 55.661 kb on - strand, within motA-1at 55.665 kb on + strand, within motA-1at 55.665 kb on + strand, within motA-1at 55.685 kb on - strand, within motA-1at 55.723 kb on + strandat 55.723 kb on + strandat 55.735 kb on - strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.781 kb on - strandat 55.841 kb on - strandat 55.843 kb on + strandat 55.843 kb on + strandat 55.851 kb on - strandat 55.851 kb on - strandat 55.851 kb on - strandat 55.883 kb on + strandat 55.901 kb on - strandat 55.910 kb on - strandat 55.925 kb on - strandat 55.935 kb on + strandat 55.967 kb on - strandat 55.980 kb on + strandat 55.980 kb on + strandat 56.004 kb on + strandat 56.008 kb on + strandat 56.025 kb on - strandat 56.026 kb on - strandat 56.070 kb on + strandat 56.090 kb on - strandat 56.115 kb on + strand, within DVU0051at 56.172 kb on + strand, within DVU0051at 56.172 kb on + strand, within DVU0051at 56.180 kb on - strand, within DVU0051at 56.180 kb on - strand, within DVU0051at 56.180 kb on - strand, within DVU0051at 56.266 kb on - strand, within DVU0051at 56.268 kb on + strand, within DVU0051at 56.276 kb on - strand, within DVU0051at 56.276 kb on - strand, within DVU0051at 56.276 kb on - strand, within DVU0051at 56.331 kb on - strand, within DVU0051at 56.362 kb on - strand, within DVU0051at 56.387 kb on - strand, within DVU0051at 56.456 kb on + strand, within DVU0051at 56.456 kb on + strand, within DVU0051at 56.456 kb on + strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.464 kb on - strand, within DVU0051at 56.494 kb on - strand, within DVU0051at 56.508 kb on - strand, within DVU0051at 56.523 kb on + strand, within DVU0051at 56.576 kb on + strand, within DVU0051at 56.631 kb on + strand, within DVU0051at 56.665 kb on + strand, within DVU0051at 56.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Tryptophan (N)
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54,105 - DVU0049 0.19 -0.1
54,274 + DVU0049 0.34 +0.2
54,282 - DVU0049 0.35 +0.5
54,290 + DVU0049 0.36 +0.5
54,456 + DVU0049 0.51 +2.2
54,464 - DVU0049 0.51 +0.2
54,482 + DVU0049 0.53 +0.2
54,503 - DVU0049 0.55 +0.0
54,514 + DVU0049 0.56 +0.1
54,543 + DVU0049 0.59 +0.4
54,553 - DVU0049 0.60 +0.3
54,563 - DVU0049 0.60 -0.9
54,566 + DVU0049 0.61 +0.0
54,596 + DVU0049 0.63 -0.1
54,605 + DVU0049 0.64 +0.1
54,614 + DVU0049 0.65 +0.2
54,624 + DVU0049 0.66 +0.4
54,646 + DVU0049 0.68 +0.0
54,677 + DVU0049 0.71 -0.9
54,685 + DVU0049 0.72 +0.1
54,685 + DVU0049 0.72 -0.4
54,693 - DVU0049 0.72 +0.9
54,693 - DVU0049 0.72 +0.4
54,707 + DVU0049 0.74 +0.1
54,712 + DVU0049 0.74 +0.1
54,730 - DVU0049 0.76 -1.4
54,778 - DVU0049 0.80 +0.1
54,809 + DVU0049 0.83 -0.5
54,809 + DVU0049 0.83 +2.0
54,817 - DVU0049 0.84 +3.4
54,997 - +0.1
54,999 + +0.2
55,038 + -0.1
55,041 - +0.4
55,118 + motA-1 DVU0050 0.15 -0.1
55,189 - motA-1 DVU0050 0.24 +1.7
55,203 - motA-1 DVU0050 0.26 +0.1
55,228 - motA-1 DVU0050 0.29 -0.7
55,257 + motA-1 DVU0050 0.33 +0.3
55,309 + motA-1 DVU0050 0.40 -0.4
55,309 + motA-1 DVU0050 0.40 +0.1
55,317 - motA-1 DVU0050 0.41 -0.1
55,372 + motA-1 DVU0050 0.48 -0.7
55,382 + motA-1 DVU0050 0.49 -0.2
55,390 - motA-1 DVU0050 0.50 -0.2
55,408 + motA-1 DVU0050 0.53 +0.3
55,408 + motA-1 DVU0050 0.53 -0.3
55,408 + motA-1 DVU0050 0.53 -0.5
55,416 - motA-1 DVU0050 0.54 +0.8
55,416 - motA-1 DVU0050 0.54 +0.2
55,540 + motA-1 DVU0050 0.70 -0.6
55,540 - motA-1 DVU0050 0.70 -1.1
55,548 - motA-1 DVU0050 0.71 +0.3
55,561 - motA-1 DVU0050 0.73 -0.6
55,661 - motA-1 DVU0050 0.86 -0.0
55,665 + motA-1 DVU0050 0.87 -0.2
55,665 + motA-1 DVU0050 0.87 +0.1
55,685 - motA-1 DVU0050 0.89 -0.2
55,723 + +3.4
55,723 + -0.2
55,735 - +0.0
55,768 - -0.1
55,768 - -0.1
55,781 - +0.5
55,841 - +0.7
55,843 + -0.3
55,843 + -2.3
55,851 - -0.3
55,851 - -0.0
55,851 - +0.1
55,883 + +1.4
55,901 - -0.7
55,910 - +0.1
55,925 - +0.4
55,935 + +0.2
55,967 - +0.1
55,980 + +0.6
55,980 + +0.2
56,004 + +0.4
56,008 + -0.1
56,025 - -0.3
56,026 - -0.3
56,070 + -1.5
56,090 - -1.3
56,115 + DVU0051 0.10 -0.8
56,172 + DVU0051 0.18 -0.1
56,172 + DVU0051 0.18 -1.0
56,180 - DVU0051 0.19 -0.1
56,180 - DVU0051 0.19 +0.4
56,180 - DVU0051 0.19 +0.4
56,266 - DVU0051 0.32 -1.0
56,268 + DVU0051 0.32 -1.2
56,276 - DVU0051 0.33 -0.7
56,276 - DVU0051 0.33 -0.6
56,276 - DVU0051 0.33 +0.1
56,331 - DVU0051 0.41 -0.7
56,362 - DVU0051 0.45 -0.9
56,387 - DVU0051 0.48 -1.0
56,456 + DVU0051 0.58 -1.7
56,456 + DVU0051 0.58 -1.2
56,456 + DVU0051 0.58 -1.0
56,464 - DVU0051 0.59 +1.4
56,464 - DVU0051 0.59 -2.3
56,464 - DVU0051 0.59 +0.6
56,464 - DVU0051 0.59 -1.2
56,464 - DVU0051 0.59 -0.4
56,464 - DVU0051 0.59 -2.0
56,464 - DVU0051 0.59 -1.1
56,464 - DVU0051 0.59 -0.8
56,494 - DVU0051 0.63 -0.3
56,508 - DVU0051 0.65 +0.1
56,523 + DVU0051 0.68 -1.3
56,576 + DVU0051 0.75 +0.7
56,631 + DVU0051 0.83 +0.1
56,665 + DVU0051 0.87 -1.6
56,713 + -0.9

Or see this region's nucleotide sequence