Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03027 and SMc03028 are separated by 6 nucleotides SMc03028 and SMc03029 overlap by 1 nucleotides SMc03029 and SMc03030 are separated by 11 nucleotides SMc03030 and SMc03031 are separated by 21 nucleotides SMc03031 and SMc03032 overlap by 4 nucleotides
SMc03027: SMc03027 - flagellar basal body rod protein FlgB, at 724,938 to 725,318
SMc03027
SMc03028: SMc03028 - flagellar basal body rod protein FlgC, at 725,325 to 725,744
SMc03028
SMc03029: SMc03029 - flagellar hook-basal body protein FliE, at 725,744 to 726,079
SMc03029
SMc03030: SMc03030 - flagellar basal body rod protein FlgG, at 726,091 to 726,879
SMc03030
SMc03031: SMc03031 - flagellar basal body P-ring biosynthesis protein FlgA, at 726,901 to 727,407
SMc03031
SMc03032: SMc03032 - flagellar basal body P-ring protein, at 727,404 to 728,519
SMc03032
Position (kb) 726
727 Strain fitness (log2 ratio) -1
0
1 at 725.202 kb on - strand, within SMc03027 at 725.202 kb on - strand, within SMc03027 at 725.253 kb on + strand, within SMc03027 at 725.316 kb on + strand at 725.317 kb on - strand at 725.317 kb on - strand at 725.349 kb on - strand at 725.621 kb on + strand, within SMc03028 at 725.665 kb on - strand, within SMc03028 at 725.742 kb on + strand at 725.742 kb on + strand at 725.767 kb on - strand at 725.767 kb on - strand at 725.767 kb on - strand at 726.051 kb on - strand at 726.493 kb on - strand, within SMc03030 at 726.493 kb on - strand, within SMc03030 at 726.742 kb on + strand, within SMc03030 at 726.743 kb on - strand, within SMc03030 at 726.746 kb on + strand, within SMc03030 at 726.780 kb on + strand, within SMc03030 at 726.781 kb on - strand, within SMc03030 at 726.808 kb on + strand at 726.808 kb on + strand at 727.055 kb on - strand, within SMc03031 at 727.220 kb on - strand, within SMc03031 at 727.418 kb on + strand at 727.821 kb on + strand, within SMc03032 at 727.822 kb on - strand, within SMc03032
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 725,202 - SMc03027 0.69 +0.6 725,202 - SMc03027 0.69 +0.8 725,253 + SMc03027 0.83 +0.0 725,316 + -0.2 725,317 - +0.4 725,317 - -1.7 725,349 - +0.2 725,621 + SMc03028 0.70 -0.0 725,665 - SMc03028 0.81 -0.8 725,742 + +0.4 725,742 + +1.4 725,767 - -0.8 725,767 - +0.3 725,767 - -0.7 726,051 - -0.7 726,493 - SMc03030 0.51 -0.8 726,493 - SMc03030 0.51 -0.7 726,742 + SMc03030 0.83 -0.5 726,743 - SMc03030 0.83 -1.2 726,746 + SMc03030 0.83 -0.4 726,780 + SMc03030 0.87 +0.4 726,781 - SMc03030 0.87 -0.8 726,808 + +1.0 726,808 + +0.3 727,055 - SMc03031 0.30 -0.0 727,220 - SMc03031 0.63 -0.3 727,418 + -0.0 727,821 + SMc03032 0.37 -0.0 727,822 - SMc03032 0.37 +0.1
Or see this region's nucleotide sequence