Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03010 and SMc03011 overlap by 1 nucleotides SMc03011 and SMc03012 overlap by 4 nucleotides SMc03012 and SMc03013 are separated by 29 nucleotides
SMc03010: SMc03010 - chemotaxis-specific methylesterase, at 708,133 to 709,182
SMc03010
SMc03011: SMc03011 - chemotaxis regulator protein, at 709,182 to 709,571
SMc03011
SMc03012: SMc03012 - chemoreceptor glutamine deamidase CheD, at 709,568 to 710,119
SMc03012
SMc03013: SMc03013 - hypothetical protein, at 710,149 to 710,523
SMc03013
Position (kb) 709
710
711 Strain fitness (log2 ratio) -1
0
1
2
3 at 708.808 kb on + strand, within SMc03010 at 708.846 kb on + strand, within SMc03010 at 709.087 kb on + strand at 709.087 kb on + strand at 709.088 kb on - strand at 709.180 kb on + strand at 709.181 kb on - strand at 709.202 kb on - strand at 709.776 kb on - strand, within SMc03012 at 710.024 kb on + strand, within SMc03012 at 710.024 kb on + strand, within SMc03012 at 710.025 kb on - strand, within SMc03012 at 710.252 kb on + strand, within SMc03013 at 710.252 kb on + strand, within SMc03013 at 710.252 kb on + strand, within SMc03013 at 710.253 kb on - strand, within SMc03013 at 710.362 kb on - strand, within SMc03013 at 710.582 kb on + strand at 710.584 kb on + strand at 710.584 kb on + strand at 710.584 kb on + strand at 710.585 kb on - strand at 710.702 kb on + strand at 710.702 kb on + strand at 710.746 kb on + strand at 710.747 kb on - strand at 710.831 kb on + strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.832 kb on - strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.835 kb on + strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.836 kb on - strand at 710.837 kb on + strand at 710.838 kb on - strand at 710.839 kb on + strand at 710.839 kb on + strand at 710.840 kb on - strand at 710.841 kb on - strand at 710.845 kb on - strand at 710.922 kb on - strand at 710.948 kb on - strand at 710.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 708,808 + SMc03010 0.64 -0.5 708,846 + SMc03010 0.68 -0.8 709,087 + -0.4 709,087 + -0.2 709,088 - -0.0 709,180 + +0.6 709,181 - +0.5 709,202 - +0.3 709,776 - SMc03012 0.38 -0.0 710,024 + SMc03012 0.83 +0.2 710,024 + SMc03012 0.83 +0.8 710,025 - SMc03012 0.83 +0.4 710,252 + SMc03013 0.27 -0.5 710,252 + SMc03013 0.27 -0.1 710,252 + SMc03013 0.27 +0.6 710,253 - SMc03013 0.28 -0.1 710,362 - SMc03013 0.57 -1.4 710,582 + -1.3 710,584 + -1.0 710,584 + -0.2 710,584 + +1.6 710,585 - -0.7 710,702 + -1.0 710,702 + +0.1 710,746 + +0.6 710,747 - +0.4 710,831 + -0.4 710,832 - +0.4 710,832 - -0.7 710,832 - +0.1 710,832 - +0.2 710,832 - +0.4 710,832 - +1.1 710,832 - +0.8 710,835 + -1.0 710,835 + +3.4 710,835 + -0.2 710,835 + +0.2 710,835 + +2.0 710,835 + +0.0 710,835 + +1.4 710,835 + -1.4 710,835 + -0.4 710,835 + -0.2 710,835 + +0.5 710,836 - -0.2 710,836 - -0.5 710,836 - -0.3 710,836 - +0.7 710,836 - +0.4 710,836 - -0.4 710,836 - -0.3 710,836 - +0.9 710,836 - -0.1 710,836 - -0.3 710,836 - -0.8 710,836 - -1.2 710,837 + -1.4 710,838 - -0.3 710,839 + -1.0 710,839 + +1.4 710,840 - +1.0 710,841 - -0.3 710,845 - -0.0 710,922 - +0.8 710,948 - -1.5 710,948 - -0.3
Or see this region's nucleotide sequence