Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01843 and SMc01842 are separated by 2 nucleotides SMc01842 and SMc04454 are separated by 390 nucleotides
SMc01843: SMc01843 - 5,10-methylenetetrahydrofolate reductase, at 2,371,885 to 2,372,826
SMc01843
SMc01842: SMc01842 - methyltransferase transcription regulator protein, at 2,372,829 to 2,373,851
SMc01842
SMc04454: SMc04454 - ABC transporter ATP-binding protein, at 2,374,242 to 2,375,891
SMc04454
Position (kb)
2372
2373
2374 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2371.956 kb on - strand at 2372.065 kb on - strand, within SMc01843 at 2372.184 kb on + strand, within SMc01843 at 2372.184 kb on + strand, within SMc01843 at 2372.197 kb on + strand, within SMc01843 at 2372.198 kb on - strand, within SMc01843 at 2372.249 kb on + strand, within SMc01843 at 2372.286 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.332 kb on + strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.333 kb on - strand, within SMc01843 at 2372.445 kb on - strand, within SMc01843 at 2372.465 kb on + strand, within SMc01843 at 2372.675 kb on + strand, within SMc01843 at 2372.675 kb on + strand, within SMc01843 at 2372.676 kb on - strand, within SMc01843 at 2372.676 kb on - strand, within SMc01843 at 2372.768 kb on + strand at 2372.784 kb on + strand at 2372.785 kb on - strand at 2373.151 kb on + strand, within SMc01842 at 2373.152 kb on - strand, within SMc01842 at 2373.485 kb on - strand, within SMc01842 at 2373.649 kb on + strand, within SMc01842 at 2373.728 kb on + strand, within SMc01842 at 2373.851 kb on + strand at 2373.878 kb on - strand at 2373.976 kb on + strand at 2373.977 kb on - strand at 2374.038 kb on + strand at 2374.205 kb on + strand at 2374.234 kb on + strand at 2374.234 kb on + strand at 2374.234 kb on + strand at 2374.235 kb on - strand at 2374.261 kb on + strand at 2374.261 kb on + strand at 2374.262 kb on - strand at 2374.262 kb on - strand at 2374.424 kb on + strand, within SMc04454 at 2374.424 kb on + strand, within SMc04454 at 2374.630 kb on + strand, within SMc04454 at 2374.631 kb on - strand, within SMc04454
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,371,956 - +0.4 2,372,065 - SMc01843 0.19 -0.6 2,372,184 + SMc01843 0.32 -0.3 2,372,184 + SMc01843 0.32 +1.4 2,372,197 + SMc01843 0.33 +0.7 2,372,198 - SMc01843 0.33 -0.2 2,372,249 + SMc01843 0.39 +0.3 2,372,286 + SMc01843 0.43 -0.3 2,372,332 + SMc01843 0.47 -0.0 2,372,332 + SMc01843 0.47 +0.5 2,372,332 + SMc01843 0.47 -0.1 2,372,333 - SMc01843 0.48 -1.0 2,372,333 - SMc01843 0.48 +0.0 2,372,333 - SMc01843 0.48 -0.1 2,372,333 - SMc01843 0.48 +1.0 2,372,445 - SMc01843 0.59 -0.1 2,372,465 + SMc01843 0.62 -0.3 2,372,675 + SMc01843 0.84 -0.3 2,372,675 + SMc01843 0.84 -0.0 2,372,676 - SMc01843 0.84 -0.5 2,372,676 - SMc01843 0.84 -0.6 2,372,768 + -0.1 2,372,784 + +0.1 2,372,785 - +0.2 2,373,151 + SMc01842 0.31 -0.1 2,373,152 - SMc01842 0.32 -1.1 2,373,485 - SMc01842 0.64 -0.3 2,373,649 + SMc01842 0.80 -0.7 2,373,728 + SMc01842 0.88 +0.3 2,373,851 + +1.3 2,373,878 - +0.3 2,373,976 + +0.6 2,373,977 - -0.5 2,374,038 + -0.6 2,374,205 + +0.1 2,374,234 + +0.9 2,374,234 + +0.1 2,374,234 + +0.2 2,374,235 - -1.5 2,374,261 + +0.7 2,374,261 + +0.9 2,374,262 - -0.9 2,374,262 - +2.9 2,374,424 + SMc04454 0.11 +0.2 2,374,424 + SMc04454 0.11 +0.5 2,374,630 + SMc04454 0.24 +0.2 2,374,631 - SMc04454 0.24 +3.6
Or see this region's nucleotide sequence