Strain Fitness in Sinorhizobium meliloti 1021 around SMc01782

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01780 and SMc01781 are separated by 72 nucleotidesSMc01781 and SMc01782 are separated by 137 nucleotidesSMc01782 and SMc01783 are separated by 82 nucleotidesSMc01783 and SMc01784 are separated by 193 nucleotides SMc01780: SMc01780 - membrane-bound proton-translocating pyrophosphatase, at 1,325,083 to 1,327,218 SMc01780 SMc01781: SMc01781 - hypothetical protein, at 1,327,291 to 1,327,797 SMc01781 SMc01782: SMc01782 - hypothetical protein, at 1,327,935 to 1,328,471 SMc01782 SMc01783: SMc01783 - hypothetical protein, at 1,328,554 to 1,329,105 SMc01783 SMc01784: SMc01784 - glycerol-3-phosphate acyltransferase PlsX, at 1,329,299 to 1,330,342 SMc01784 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1at 1327.132 kb on + strandat 1327.133 kb on - strandat 1327.133 kb on - strandat 1327.239 kb on - strandat 1327.292 kb on + strandat 1327.970 kb on + strandat 1327.970 kb on + strandat 1327.971 kb on - strandat 1327.992 kb on + strand, within SMc01782at 1327.993 kb on - strand, within SMc01782at 1328.101 kb on - strand, within SMc01782at 1328.256 kb on + strand, within SMc01782at 1328.275 kb on - strand, within SMc01782at 1328.414 kb on + strand, within SMc01782at 1328.414 kb on + strand, within SMc01782at 1328.605 kb on - strandat 1328.944 kb on - strand, within SMc01783at 1329.156 kb on + strandat 1329.216 kb on + strandat 1329.264 kb on + strandat 1329.264 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,327,132 + +0.6
1,327,133 - -0.2
1,327,133 - -0.7
1,327,239 - -1.5
1,327,292 + +0.4
1,327,970 + -0.6
1,327,970 + -1.2
1,327,971 - -0.8
1,327,992 + SMc01782 0.11 -0.4
1,327,993 - SMc01782 0.11 -1.8
1,328,101 - SMc01782 0.31 -1.0
1,328,256 + SMc01782 0.60 -1.4
1,328,275 - SMc01782 0.63 -0.9
1,328,414 + SMc01782 0.89 -0.2
1,328,414 + SMc01782 0.89 -0.6
1,328,605 - +0.2
1,328,944 - SMc01783 0.71 +1.2
1,329,156 + -0.2
1,329,216 + +0.9
1,329,264 + +0.2
1,329,264 + +0.3

Or see this region's nucleotide sequence