Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01780 and SMc01781 are separated by 72 nucleotides SMc01781 and SMc01782 are separated by 137 nucleotides SMc01782 and SMc01783 are separated by 82 nucleotides SMc01783 and SMc01784 are separated by 193 nucleotides
SMc01780: SMc01780 - membrane-bound proton-translocating pyrophosphatase, at 1,325,083 to 1,327,218
SMc01780
SMc01781: SMc01781 - hypothetical protein, at 1,327,291 to 1,327,797
SMc01781
SMc01782: SMc01782 - hypothetical protein, at 1,327,935 to 1,328,471
SMc01782
SMc01783: SMc01783 - hypothetical protein, at 1,328,554 to 1,329,105
SMc01783
SMc01784: SMc01784 - glycerol-3-phosphate acyltransferase PlsX, at 1,329,299 to 1,330,342
SMc01784
Position (kb)
1327
1328
1329 Strain fitness (log2 ratio)
-2
-1
0
1 at 1327.132 kb on + strand at 1327.133 kb on - strand at 1327.133 kb on - strand at 1327.239 kb on - strand at 1327.292 kb on + strand at 1327.970 kb on + strand at 1327.970 kb on + strand at 1327.971 kb on - strand at 1327.992 kb on + strand, within SMc01782 at 1327.993 kb on - strand, within SMc01782 at 1328.101 kb on - strand, within SMc01782 at 1328.256 kb on + strand, within SMc01782 at 1328.275 kb on - strand, within SMc01782 at 1328.414 kb on + strand, within SMc01782 at 1328.414 kb on + strand, within SMc01782 at 1328.605 kb on - strand at 1328.944 kb on - strand, within SMc01783 at 1329.156 kb on + strand at 1329.216 kb on + strand at 1329.264 kb on + strand at 1329.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,327,132 + +0.6 1,327,133 - -0.2 1,327,133 - -0.7 1,327,239 - -1.5 1,327,292 + +0.4 1,327,970 + -0.6 1,327,970 + -1.2 1,327,971 - -0.8 1,327,992 + SMc01782 0.11 -0.4 1,327,993 - SMc01782 0.11 -1.8 1,328,101 - SMc01782 0.31 -1.0 1,328,256 + SMc01782 0.60 -1.4 1,328,275 - SMc01782 0.63 -0.9 1,328,414 + SMc01782 0.89 -0.2 1,328,414 + SMc01782 0.89 -0.6 1,328,605 - +0.2 1,328,944 - SMc01783 0.71 +1.2 1,329,156 + -0.2 1,329,216 + +0.9 1,329,264 + +0.2 1,329,264 + +0.3
Or see this region's nucleotide sequence