Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01653 and SMc01654 overlap by 4 nucleotides SMc01654 and SMc01655 overlap by 11 nucleotides SMc01655 and SMc01656 are separated by 27 nucleotides
SMc01653: SMc01653 - ABC transporter ATP-binding protein, at 2,450,528 to 2,451,568
SMc01653
SMc01654: SMc01654 - ABC transporter permease, at 2,451,565 to 2,452,515
SMc01654
SMc01655: SMc01655 - ABC transporter permease, at 2,452,505 to 2,453,320
SMc01655
SMc01656: SMc01656 - gamma-aminobutyraldehyde dehydrogenase, at 2,453,348 to 2,454,775
SMc01656
Position (kb)
2452
2453
2454 Strain fitness (log2 ratio)
-2
-1
0
1 at 2451.703 kb on + strand, within SMc01654 at 2451.770 kb on + strand, within SMc01654 at 2451.771 kb on - strand, within SMc01654 at 2451.902 kb on - strand, within SMc01654 at 2451.947 kb on - strand, within SMc01654 at 2451.947 kb on - strand, within SMc01654 at 2451.979 kb on + strand, within SMc01654 at 2451.980 kb on - strand, within SMc01654 at 2451.994 kb on + strand, within SMc01654 at 2451.995 kb on - strand, within SMc01654 at 2451.995 kb on - strand, within SMc01654 at 2451.995 kb on - strand, within SMc01654 at 2452.123 kb on + strand, within SMc01654 at 2452.124 kb on - strand, within SMc01654 at 2452.124 kb on - strand, within SMc01654 at 2452.125 kb on + strand, within SMc01654 at 2452.126 kb on - strand, within SMc01654 at 2452.150 kb on + strand, within SMc01654 at 2452.150 kb on + strand, within SMc01654 at 2452.151 kb on - strand, within SMc01654 at 2452.340 kb on - strand at 2452.340 kb on - strand, within SMc01654 at 2452.340 kb on - strand, within SMc01654 at 2452.604 kb on + strand, within SMc01655 at 2452.632 kb on - strand, within SMc01655 at 2452.959 kb on - strand, within SMc01655 at 2452.959 kb on - strand, within SMc01655 at 2453.051 kb on + strand, within SMc01655 at 2453.273 kb on + strand at 2453.273 kb on + strand at 2453.274 kb on - strand at 2453.276 kb on + strand at 2453.277 kb on - strand at 2453.277 kb on - strand at 2453.795 kb on + strand, within SMc01656 at 2454.006 kb on + strand, within SMc01656 at 2454.006 kb on + strand, within SMc01656 at 2454.167 kb on + strand, within SMc01656 at 2454.167 kb on + strand, within SMc01656 at 2454.168 kb on - strand, within SMc01656 at 2454.168 kb on - strand, within SMc01656 at 2454.168 kb on - strand, within SMc01656 at 2454.168 kb on - strand, within SMc01656 at 2454.168 kb on - strand, within SMc01656 at 2454.206 kb on + strand, within SMc01656 at 2454.206 kb on + strand, within SMc01656 at 2454.206 kb on + strand, within SMc01656 at 2454.207 kb on - strand, within SMc01656 at 2454.319 kb on + strand, within SMc01656 at 2454.320 kb on - strand, within SMc01656
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,451,703 + SMc01654 0.15 +0.4 2,451,770 + SMc01654 0.22 +1.0 2,451,771 - SMc01654 0.22 +0.1 2,451,902 - SMc01654 0.35 +0.4 2,451,947 - SMc01654 0.40 +0.5 2,451,947 - SMc01654 0.40 -0.8 2,451,979 + SMc01654 0.44 -0.3 2,451,980 - SMc01654 0.44 -0.5 2,451,994 + SMc01654 0.45 -0.7 2,451,995 - SMc01654 0.45 -0.4 2,451,995 - SMc01654 0.45 -0.0 2,451,995 - SMc01654 0.45 +0.2 2,452,123 + SMc01654 0.59 +0.2 2,452,124 - SMc01654 0.59 -0.0 2,452,124 - SMc01654 0.59 -0.9 2,452,125 + SMc01654 0.59 -0.3 2,452,126 - SMc01654 0.59 +0.2 2,452,150 + SMc01654 0.62 -2.0 2,452,150 + SMc01654 0.62 +0.1 2,452,151 - SMc01654 0.62 -0.0 2,452,340 - +1.3 2,452,340 - SMc01654 0.81 -0.5 2,452,340 - SMc01654 0.81 -0.0 2,452,604 + SMc01655 0.12 -0.9 2,452,632 - SMc01655 0.16 -1.5 2,452,959 - SMc01655 0.56 -1.9 2,452,959 - SMc01655 0.56 -0.5 2,453,051 + SMc01655 0.67 -0.4 2,453,273 + -0.3 2,453,273 + -0.4 2,453,274 - -0.6 2,453,276 + -0.7 2,453,277 - -0.1 2,453,277 - -0.3 2,453,795 + SMc01656 0.31 -0.4 2,454,006 + SMc01656 0.46 +0.2 2,454,006 + SMc01656 0.46 +0.7 2,454,167 + SMc01656 0.57 -0.2 2,454,167 + SMc01656 0.57 +0.5 2,454,168 - SMc01656 0.57 -0.0 2,454,168 - SMc01656 0.57 +0.1 2,454,168 - SMc01656 0.57 +0.3 2,454,168 - SMc01656 0.57 -0.8 2,454,168 - SMc01656 0.57 +0.2 2,454,206 + SMc01656 0.60 -0.4 2,454,206 + SMc01656 0.60 -0.1 2,454,206 + SMc01656 0.60 +0.7 2,454,207 - SMc01656 0.60 +0.9 2,454,319 + SMc01656 0.68 -0.3 2,454,320 - SMc01656 0.68 +0.3
Or see this region's nucleotide sequence