Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01469 and SMc01470 are separated by 250 nucleotides SMc01470 and SMc01471 are separated by 147 nucleotides SMc01471 and SMc01472 are separated by 161 nucleotides
SMc01469: SMc01469 - methyl accepting chemotaxis transmembrane protein, at 2,315,870 to 2,317,939
SMc01469
SMc01470: SMc01470 - signal peptide protein, at 2,318,190 to 2,318,348
SMc01470
SMc01471: SMc01471 - cytochrome C oxidase assembly factor transmembrane protein, at 2,318,496 to 2,319,095
SMc01471
SMc01472: SMc01472 - 50S ribosomal protein L11 methyltransferase, at 2,319,257 to 2,320,132
SMc01472
Position (kb)
2318
2319
2320 Strain fitness (log2 ratio)
-2
-1
0
1 at 2317.831 kb on - strand at 2317.895 kb on + strand at 2317.955 kb on + strand at 2318.038 kb on + strand at 2318.040 kb on - strand at 2318.041 kb on + strand at 2318.091 kb on + strand at 2318.091 kb on + strand at 2318.092 kb on - strand at 2318.178 kb on + strand at 2318.179 kb on - strand at 2318.422 kb on + strand at 2318.422 kb on + strand at 2318.422 kb on + strand at 2318.423 kb on - strand at 2318.791 kb on - strand, within SMc01471 at 2318.819 kb on + strand, within SMc01471 at 2318.842 kb on - strand, within SMc01471 at 2318.928 kb on + strand, within SMc01471 at 2318.928 kb on + strand, within SMc01471 at 2318.928 kb on + strand, within SMc01471 at 2319.112 kb on - strand at 2319.151 kb on - strand at 2319.151 kb on - strand at 2319.404 kb on + strand, within SMc01472 at 2319.405 kb on - strand, within SMc01472 at 2320.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,317,831 - +0.2 2,317,895 + +0.1 2,317,955 + +0.2 2,318,038 + -0.8 2,318,040 - +1.0 2,318,041 + +0.0 2,318,091 + +0.3 2,318,091 + +0.2 2,318,092 - +0.9 2,318,178 + -0.8 2,318,179 - +0.6 2,318,422 + +0.2 2,318,422 + -0.8 2,318,422 + +0.0 2,318,423 - -1.1 2,318,791 - SMc01471 0.49 -1.8 2,318,819 + SMc01471 0.54 +0.3 2,318,842 - SMc01471 0.58 -1.9 2,318,928 + SMc01471 0.72 -0.7 2,318,928 + SMc01471 0.72 +1.3 2,318,928 + SMc01471 0.72 -0.7 2,319,112 - -1.1 2,319,151 - -1.5 2,319,151 - -0.5 2,319,404 + SMc01472 0.17 -2.1 2,319,405 - SMc01472 0.17 -1.2 2,320,060 + -1.0
Or see this region's nucleotide sequence