Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01364 and SMc01363 are separated by 191 nucleotides SMc01363 and SMc01362 overlap by 1 nucleotides SMc01362 and SMc01361 are separated by 29 nucleotides
SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699
SMc01364
SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042
SMc01363
SMc01362: SMc01362 - glycerol-3-phosphate acyltransferase PlsY, at 1,421,042 to 1,421,653
SMc01362
SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975
SMc01361
Position (kb)
1419
1420
1421
1422 Strain fitness (log2 ratio)
-2
-1
0
1 at 1419.781 kb on + strand at 1419.781 kb on + strand at 1419.782 kb on - strand at 1419.782 kb on - strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.787 kb on + strand at 1419.788 kb on - strand at 1419.912 kb on + strand at 1419.912 kb on + strand at 1419.971 kb on + strand at 1419.971 kb on + strand at 1419.971 kb on + strand at 1419.972 kb on - strand at 1419.972 kb on - strand at 1419.998 kb on + strand at 1419.999 kb on - strand at 1419.999 kb on - strand at 1419.999 kb on - strand at 1420.294 kb on + strand, within SMc01363 at 1421.715 kb on - strand at 1421.715 kb on - strand at 1421.923 kb on + strand, within SMc01361 at 1421.924 kb on - strand, within SMc01361 at 1421.939 kb on + strand, within SMc01361
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,419,781 + -0.9 1,419,781 + +0.4 1,419,782 - -0.7 1,419,782 - -1.0 1,419,785 + -0.4 1,419,785 + +0.3 1,419,785 + -0.0 1,419,785 + -0.2 1,419,785 + -0.2 1,419,786 - -0.6 1,419,786 - +0.1 1,419,786 - -0.1 1,419,786 - -0.4 1,419,787 + -0.4 1,419,788 - -0.9 1,419,912 + -1.0 1,419,912 + -1.3 1,419,971 + -0.0 1,419,971 + -0.7 1,419,971 + -0.2 1,419,972 - +0.6 1,419,972 - -0.1 1,419,998 + -0.4 1,419,999 - -0.6 1,419,999 - -0.5 1,419,999 - -1.4 1,420,294 + SMc01363 0.35 +0.8 1,421,715 - -2.3 1,421,715 - -0.9 1,421,923 + SMc01361 0.19 +1.1 1,421,924 - SMc01361 0.19 -1.5 1,421,939 + SMc01361 0.20 -1.4
Or see this region's nucleotide sequence